Variant report

Variant	rs797513
Chromosome Location	chr13:51227155-51227156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1268809	0.93[AFR][1000 genomes]
rs1319415	0.93[AFR][1000 genomes]
rs55824141	1.00[AFR][1000 genomes]
rs797473	0.93[AFR][1000 genomes]
rs797476	0.93[AFR][1000 genomes]
rs797480	0.93[AFR][1000 genomes]
rs797484	0.93[AFR][1000 genomes]
rs797514	0.86[AFR][1000 genomes]
rs797523	0.93[AFR][1000 genomes]
rs797524	0.93[AFR][1000 genomes]
rs797525	0.93[AFR][1000 genomes]
rs797526	0.93[AFR][1000 genomes]
rs797527	0.93[AFR][1000 genomes]
rs797528	0.93[AFR][1000 genomes]
rs797529	0.93[AFR][1000 genomes]
rs797530	0.93[AFR][1000 genomes]
rs797531	0.93[AFR][1000 genomes]
rs797533	0.93[AFR][1000 genomes]
rs797534	0.93[AFR][1000 genomes]
rs797535	0.93[AFR][1000 genomes]
rs813328	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51220400-51239400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:51223800-51227400	Enhancers	Thymus	Thymus
3	chr13:51223800-51227600	Enhancers	Fetal Thymus	thymus
4	chr13:51225600-51227800	Enhancers	Dnd41	blood
5	chr13:51226400-51232400	Weak transcription	Psoas Muscle	Psoas

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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