Variant report

Variant	rs797520
Chromosome Location	chr13:51172024-51172025
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DLEU7-6	chr13:51171805-51172341	NONHSAT033863

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs2160251	0.87[EUR][1000 genomes]
rs4942930	0.84[EUR][1000 genomes]
rs4942931	0.87[EUR][1000 genomes]
rs6561585	0.86[EUR][1000 genomes]
rs6561586	0.86[EUR][1000 genomes]
rs6561587	0.86[EUR][1000 genomes]
rs677627	0.81[CEU][hapmap]
rs9535468	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2753964	chr13:50545399-51421199	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
2	esv2753492	chr13:50550081-51461720	Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1256 gene(s)	inside rSNPs	diseases
3	esv2753864	chr13:51136699-51375199	Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs797520	DACH1	trans	parietal	SCAN
rs797520	NUDT15	cis	cerebellum	SCAN
rs797520	NUDT15	cis	parietal	SCAN

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51160200-51174000	Enhancers	Primary B cells from peripheral blood	blood
2	chr13:51162200-51172600	Weak transcription	Spleen	Spleen
3	chr13:51168000-51173000	Enhancers	Fetal Intestine Small	intestine
4	chr13:51168000-51174000	Enhancers	Fetal Muscle Leg	muscle
5	chr13:51168000-51174400	Enhancers	Fetal Thymus	thymus
6	chr13:51168400-51174000	Enhancers	Left Ventricle	heart
7	chr13:51168800-51173800	Enhancers	Adipose Nuclei	Adipose
8	chr13:51169000-51172600	Weak transcription	Fetal Kidney	kidney
9	chr13:51169000-51173000	Enhancers	HepG2	liver
10	chr13:51169000-51174400	Enhancers	Fetal Heart	heart
11	chr13:51169200-51174000	Enhancers	Primary B cells from cord blood	blood
12	chr13:51169200-51174000	Enhancers	Thymus	Thymus
13	chr13:51169200-51174200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr13:51169200-51174800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:51169400-51172200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr13:51169400-51173400	Enhancers	Right Atrium	heart
17	chr13:51169600-51172600	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr13:51169600-51173200	Weak transcription	Fetal Lung	lung
19	chr13:51169800-51174600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr13:51169800-51175000	Enhancers	Dnd41	blood
21	chr13:51170000-51172200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr13:51170200-51173400	Enhancers	Fetal Intestine Large	intestine
23	chr13:51170200-51173400	Enhancers	Right Ventricle	heart
24	chr13:51170600-51172200	Weak transcription	Fetal Muscle Trunk	muscle
25	chr13:51171200-51172200	Weak transcription	HUES6 Cell Line	embryonic stem cell
26	chr13:51171400-51172400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr13:51171400-51173200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr13:51171600-51172400	Weak transcription	Psoas Muscle	Psoas
29	chr13:51171600-51172600	Weak transcription	Pancreas	Pancrea
30	chr13:51171600-51174800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
31	chr13:51172000-51173400	Enhancers	GM12878-XiMat	blood

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