Variant report

Variant	rs7975905
Chromosome Location	chr12:60216558-60216559
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10506399	0.84[AFR][1000 genomes]
rs10877352	0.84[ASN][1000 genomes]
rs11173158	0.91[AFR][1000 genomes]
rs11173169	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11173170	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11173171	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11173189	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11173197	0.84[ASN][1000 genomes]
rs11173199	0.83[ASN][1000 genomes]
rs11173200	0.82[ASN][1000 genomes]
rs11173201	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11173202	0.82[ASN][1000 genomes]
rs12049943	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12298637	0.84[ASN][1000 genomes]
rs17572877	0.93[AFR][1000 genomes]
rs17572912	0.93[AFR][1000 genomes]
rs2365314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2365315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2365317	0.93[AFR][1000 genomes]
rs2365318	0.93[AFR][1000 genomes]
rs34639075	0.93[AFR][1000 genomes]
rs35218918	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35365387	0.86[AFR][1000 genomes]
rs35971116	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3763980	0.84[AFR][1000 genomes]
rs4387384	0.84[ASN][1000 genomes]
rs4412789	0.83[ASN][1000 genomes]
rs4417320	0.84[ASN][1000 genomes]
rs4539371	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4623939	0.82[ASN][1000 genomes]
rs4758741	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4758846	0.83[ASN][1000 genomes]
rs56098460	0.82[ASN][1000 genomes]
rs56682442	0.92[AFR][1000 genomes]
rs7979504	0.93[AFR][1000 genomes]
rs9788077	0.93[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869425	chr12:59746898-60479741	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
2	esv3365928	chr12:60042531-60343212	Enhancers Strong transcription Weak transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv899134	chr12:60141518-60263723	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv899135	chr12:60156046-60228610	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv559102	chr12:60164408-60221898	Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7975905	SLC16A7	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:60215200-60216800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr12:60215800-60217000	Weak transcription	NHDF-Ad	bronchial

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