Variant report

Variant	rs797648
Chromosome Location	chr7:83479375-83479376
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs797635	0.82[ASN][1000 genomes]
rs797637	0.82[ASN][1000 genomes]
rs797645	0.93[ASN][1000 genomes]
rs797649	0.84[AFR][1000 genomes]
rs797657	0.86[EUR][1000 genomes]
rs797658	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv888617	chr7:83352427-83479375	Flanking Active TSS ZNF genes & repeats Enhancers Bivalent Enhancer Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv607707	chr7:83381032-83646816	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1020865	chr7:83393101-83504439	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1017260	chr7:83393101-83506643	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv888619	chr7:83452312-83549032	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv888620	chr7:83459908-83593805	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv1794884	chr7:83468908-83489827	Enhancers Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:83477600-83480600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr7:83477800-83479400	Enhancers	NHDF-Ad	bronchial
3	chr7:83478000-83479400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr7:83478000-83480200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr7:83478200-83480400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr7:83478600-83479600	Enhancers	iPS-18 Cell Line	embryonic stem cell
7	chr7:83478600-83479800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr7:83478600-83479800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr7:83478600-83480400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:83478600-83480600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr7:83478800-83479800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr7:83478800-83479800	Enhancers	HUES6 Cell Line	embryonic stem cell
13	chr7:83478800-83479800	Enhancers	iPS-15b Cell Line	embryonic stem cell
14	chr7:83478800-83479800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr7:83479000-83479400	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr7:83479000-83479800	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr7:83479000-83479800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr7:83479200-83479800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:83479200-83479800	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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