Variant report

Variant	rs79767847
Chromosome Location	chr7:150944932-150944933
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAX	chr7:150944628-150945114	A549	lung:	n/a	chr7:150944835-150944842 chr7:150944833-150944844 chr7:150944834-150944843
2	MAX	chr7:150944612-150945132	SK-N-SH	brain:	n/a	chr7:150944835-150944842 chr7:150944833-150944844 chr7:150944834-150944843
3	USF1	chr7:150944631-150945097	SK-N-SH	brain:	n/a	n/a
4	POLR2A	chr7:150942456-150946649	IMR90	lung:	n/a	n/a
5	MAX	chr7:150944624-150946666	K562	blood:	n/a	chr7:150946089-150946099 chr7:150944835-150944842 chr7:150946092-150946102 chr7:150944833-150944844 chr7:150944834-150944843
6	POLR2A	chr7:150944727-150945038	HCT-116	colon:	n/a	n/a
7	MAX	chr7:150944810-150944981	Hela-S3	cervix:	n/a	chr7:150944835-150944842 chr7:150944833-150944844 chr7:150944834-150944843
8	MAX	chr7:150944610-150945218	SK-N-SH	brain:	n/a	chr7:150944835-150944842 chr7:150944833-150944844 chr7:150944834-150944843
9	USF1	chr7:150944633-150944934	K562	blood:	n/a	n/a
10	ZBTB7A	chr7:150944351-150946539	K562	blood:	n/a	chr7:150945786-150945794
11	MAZ	chr7:150943987-150945269	IMR90	lung:	n/a	chr7:150944835-150944842 chr7:150944833-150944844 chr7:150944834-150944843
12	USF1	chr7:150944689-150944949	SK-N-SH_RA	brain:	n/a	n/a
13	POLR2A	chr7:150944733-150944983	HCT-116	colon:	n/a	n/a
14	MAX	chr7:150944751-150944965	K562	blood:	n/a	chr7:150944835-150944842 chr7:150944833-150944844 chr7:150944834-150944843
15	MXI1	chr7:150943671-150947189	IMR90	lung:	n/a	chr7:150944194-150944203 chr7:150945408-150945423
16	ZNF263	chr7:150942876-150947378	HEK293-T-REx	kidney:	n/a	chr7:150943567-150943576 chr7:150943679-150943688 chr7:150943760-150943769 chr7:150946929-150946938 chr7:150947019-150947028
17	MAX	chr7:150944521-150946898	A549	lung:	n/a	chr7:150946089-150946099 chr7:150944835-150944842 chr7:150946092-150946102 chr7:150944833-150944844 chr7:150946726-150946735 chr7:150944834-150944843
18	E2F6	chr7:150944714-150945232	K562	blood:	n/a	n/a
19	ZBTB7A	chr7:150944736-150947117	ECC-1	luminal epithelium:	n/a	chr7:150945786-150945794 chr7:150946998-150947005 chr7:150946879-150946886

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:150944159..150946342-chr7:150972887..150975150,2	MCF-7	breast:
2	chr7:150928143..150930111-chr7:150944656..150946614,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000243018	TF binding region
SMARCD3	TF binding region
ENSG00000033100	Chromatin interaction
ENSG00000082014	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1821419	chr7:150593315-150974269	Enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	128 gene(s)	inside rSNPs	diseases
2	nsv889476	chr7:150729212-150951819	Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	120 gene(s)	inside rSNPs	diseases
3	nsv609035	chr7:150896223-150955765	Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
4	nsv889487	chr7:150922952-150988172	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	73 gene(s)	inside rSNPs	diseases
5	nsv889488	chr7:150926775-150955765	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
6	esv3374710	chr7:150944544-150947592	Active TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:150940200-150945400	Enhancers	K562	blood
2	chr7:150941600-150945600	Flanking Active TSS	Stomach Smooth Muscle	stomach
3	chr7:150941800-150945600	Flanking Active TSS	Brain Germinal Matrix	brain
4	chr7:150942000-150945200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
5	chr7:150942000-150945600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:150942200-150945000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr7:150942200-150945000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:150942800-150945000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr7:150942800-150945200	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
10	chr7:150942800-150945400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
11	chr7:150943000-150945000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:150943000-150945000	Enhancers	Spleen	Spleen
13	chr7:150943000-150945200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
14	chr7:150943000-150945400	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
15	chr7:150943200-150945000	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr7:150943200-150945200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
17	chr7:150943200-150945400	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell
18	chr7:150943200-150945400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr7:150943400-150945000	Flanking Active TSS	HSMMtube	muscle
20	chr7:150943400-150945200	Flanking Active TSS	Fetal Brain Female	brain
21	chr7:150943400-150945600	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr7:150943600-150945200	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr7:150943800-150945200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr7:150943800-150945200	Bivalent Enhancer	ES-UCSF4 Cell Line	embryonic stem cell
25	chr7:150943800-150945200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr7:150944000-150945000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr7:150944000-150945000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr7:150944000-150945000	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
29	chr7:150944000-150945000	Flanking Active TSS	Ovary	ovary
30	chr7:150944000-150945200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr7:150944000-150945200	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr7:150944000-150945200	Flanking Active TSS	Colon Smooth Muscle	Colon
33	chr7:150944000-150945600	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr7:150944000-150945800	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr7:150944200-150945000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
36	chr7:150944200-150945000	Bivalent Enhancer	Dnd41	blood
37	chr7:150944200-150945200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
38	chr7:150944200-150945200	Flanking Active TSS	Brain Cingulate Gyrus	brain
39	chr7:150944200-150945200	Flanking Active TSS	Brain Hippocampus Middle	brain
40	chr7:150944200-150945200	Flanking Active TSS	Osteobl	bone
41	chr7:150944200-150946400	Active TSS	Right Ventricle	heart
42	chr7:150944400-150945000	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr7:150944400-150945000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
44	chr7:150944400-150945000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr7:150944400-150945000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr7:150944400-150945000	Bivalent Enhancer	Thymus	Thymus
47	chr7:150944400-150945200	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr7:150944400-150945200	Bivalent Enhancer	Primary hematopoietic stem cells	blood
49	chr7:150944400-150945200	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
50	chr7:150944400-150945200	Flanking Bivalent TSS/Enh	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links