Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:41994793..41997112-chr12:42000888..42003362,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10506206	0.89[JPT][hapmap]
rs11181057	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11181070	0.89[EUR][1000 genomes]
rs1157533	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12317349	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12322609	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12812871	0.86[JPT][hapmap]
rs12813157	0.90[JPT][hapmap]
rs12821086	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1466162	0.83[EUR][1000 genomes]
rs1495774	0.89[EUR][1000 genomes]
rs17129602	0.97[EUR][1000 genomes]
rs17129608	0.89[EUR][1000 genomes]
rs17129618	0.89[EUR][1000 genomes]
rs17650803	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17651187	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1908592	0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34776809	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35594056	0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35721446	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35770975	0.83[EUR][1000 genomes]
rs3847986	0.89[EUR][1000 genomes]
rs66645579	0.83[EUR][1000 genomes]
rs67237911	0.89[EUR][1000 genomes]
rs7307151	0.90[JPT][hapmap]
rs7960450	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3337301	chr12:41851654-42093677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv899040	chr12:41905897-42181706	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42000200-42003800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr12:42000600-42012000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr12:42001400-42002600	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr12:42001800-42002600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr12:42002400-42002600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr12:42002400-42002600	Enhancers	iPS-20b Cell Line	embryonic stem cell

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