Variant report

Variant	rs7976936
Chromosome Location	chr12:44952101-44952102
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10161119	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11182540	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11182560	1.00[MEX][hapmap]
rs12297768	0.90[YRI][hapmap];0.93[AFR][1000 genomes]
rs12298472	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs12299765	1.00[MEX][hapmap]
rs12302959	0.83[YRI][hapmap]
rs12304543	0.80[AFR][1000 genomes]
rs12309120	0.85[AFR][1000 genomes]
rs12313496	1.00[YRI][hapmap];0.93[AFR][1000 genomes]
rs17094772	1.00[MEX][hapmap]
rs7974071	0.96[AFR][1000 genomes]
rs7975163	1.00[YRI][hapmap];0.96[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049818	chr12:44486312-45133783	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:44918600-44972000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:44940200-44999600	Weak transcription	Primary T helper cells fromperipheralblood	blood
3	chr12:44943400-44998600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr12:44946400-44976400	Weak transcription	Primary T cells fromperipheralblood	blood
5	chr12:44949000-44956800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:44950000-44964000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:44950400-44957600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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