Variant report

Variant	rs7977695
Chromosome Location	chr12:25487260-25487261
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10771201	0.98[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs10842535	0.93[AFR][1000 genomes]
rs10842536	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10842538	0.91[ASN][1000 genomes]
rs11047954	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs12582102	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6487473	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs6487474	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7297448	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7957743	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7965364	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7970912	0.97[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898928	chr12:25458354-25499342	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv976719	chr12:25482467-25552186	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25477400-25487400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
2	chr12:25485800-25487400	Enhancers	NHLF	lung
3	chr12:25485800-25487600	Enhancers	Hela-S3	cervix
4	chr12:25486200-25487400	Enhancers	NHEK	skin
5	chr12:25486400-25487400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr12:25486400-25487400	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr12:25486600-25487400	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr12:25486800-25487400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:25486800-25487400	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr12:25486800-25487400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:25486800-25487400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
12	chr12:25486800-25487400	Enhancers	Adipose Nuclei	Adipose
13	chr12:25486800-25487400	Enhancers	HSMM	muscle
14	chr12:25486800-25487400	Flanking Active TSS	Osteobl	bone
15	chr12:25486800-25487600	Enhancers	Primary hematopoietic stem cells	blood
16	chr12:25486800-25487600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:25486800-25487600	Enhancers	Colon Smooth Muscle	Colon
18	chr12:25486800-25487800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr12:25487000-25487400	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr12:25487000-25487400	Enhancers	Primary B cells from cord blood	blood
21	chr12:25487000-25487400	Active TSS	Monocytes-CD14+_RO01746	blood
22	chr12:25487000-25491200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:25487200-25487400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr12:25487200-25487400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr12:25487200-25487400	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chr12:25487200-25487400	Enhancers	Stomach Mucosa	stomach
27	chr12:25487200-25487400	Enhancers	NHDF-Ad	bronchial
28	chr12:25487200-25487600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr12:25487200-25487600	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr12:25487200-25487600	Enhancers	A549	lung
31	chr12:25487200-25487600	Enhancers	GM12878-XiMat	blood
32	chr12:25487200-25487600	Enhancers	NH-A	brain
33	chr12:25487200-25488400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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