Variant report

Variant	rs7977943
Chromosome Location	chr12:40985616-40985617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11177342	0.85[AMR][1000 genomes]
rs11177402	0.88[AMR][1000 genomes]
rs1492316	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs1881300	0.89[AMR][1000 genomes]
rs1881301	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1918948	0.89[AMR][1000 genomes]
rs1948402	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1965311	0.86[ASN][1000 genomes]
rs3751172	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs4767986	0.84[AMR][1000 genomes]
rs4767987	0.81[AMR][1000 genomes]
rs4768295	0.89[AMR][1000 genomes]
rs4768297	0.84[AMR][1000 genomes]
rs4768298	0.84[AMR][1000 genomes]
rs61913721	0.96[AFR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6581843	0.84[AMR][1000 genomes]
rs7132352	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7133943	0.91[CHB][hapmap];0.92[CHD][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7134461	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7302859	0.84[JPT][hapmap];0.82[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7303591	0.94[ASW][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.80[GIH][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7308571	0.90[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7487017	0.80[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs7955355	0.84[AMR][1000 genomes]
rs7958558	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7960018	0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];1.00[JPT][hapmap];0.95[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7978657	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899033	chr12:40758652-41122288	Bivalent/Poised TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv832378	chr12:40943111-41132305	Bivalent/Poised TSS Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv683	chr12:40951473-40996258	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv519683	chr12:40967369-40987568	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:40985600-40986000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:40985600-40986400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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