Variant report

Variant	rs7979986
Chromosome Location	chr12:62058432-62058433
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11174121	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11174135	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12313937	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12319647	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12320387	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12322039	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7294889	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7297714	0.85[AFR][1000 genomes]
rs7299621	0.91[AFR][1000 genomes]
rs7980919	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042044	chr12:61256015-62196885	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv1039741	chr12:62046850-62491052	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:62057800-62058600	ZNF genes & repeats	Aorta	Aorta
2	chr12:62058200-62058600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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