Variant report

Variant	rs7980714
Chromosome Location	chr12:58654537-58654538
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10877085	0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10877086	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10877087	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172511	0.84[EUR][1000 genomes]
rs11172512	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11172513	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11172514	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172515	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172516	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172518	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172519	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172520	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11172521	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12298303	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12300241	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12300281	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12302422	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12302505	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12308636	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12308645	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12308703	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12309499	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12312992	0.84[EUR][1000 genomes]
rs12316990	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12318054	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12318525	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12318566	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12423403	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12423429	0.82[ASN][1000 genomes]
rs12423693	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12424213	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1553380	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17502933	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17581313	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17581466	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1847207	0.84[EUR][1000 genomes]
rs1847208	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1847209	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1881651	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1881652	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1881653	0.84[EUR][1000 genomes]
rs1881654	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1881656	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28481485	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4760194	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4760195	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4760376	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4760379	0.81[EUR][1000 genomes]
rs4760380	0.82[EUR][1000 genomes]
rs61921164	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61921165	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61921166	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61921170	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61921171	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61938469	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61938470	0.83[EUR][1000 genomes]
rs61938471	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61938472	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7295858	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7300089	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73103914	0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7315974	0.84[EUR][1000 genomes]
rs7315990	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7316690	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7980807	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58644400-58658800	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr12:58648600-58656000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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