Variant report

Variant	rs7981516
Chromosome Location	chr13:53454488-53454489
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10162155	0.82[CHB][hapmap]
rs10507571	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10507572	1.00[CEU][hapmap];0.82[CHB][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12323047	0.91[ASN][1000 genomes]
rs2208987	1.00[ASN][1000 genomes]
rs57242386	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57792869	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58961128	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59818222	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60535238	0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60620275	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9591475	0.91[ASN][1000 genomes]
rs9591476	0.93[ASN][1000 genomes]
rs9591478	0.98[ASN][1000 genomes]
rs9596711	0.93[ASN][1000 genomes]
rs9596712	0.98[ASN][1000 genomes]
rs9596714	0.93[ASN][1000 genomes]
rs9596715	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530719	chr13:53173014-53675953	Weak transcription Flanking Bivalent TSS/Enh Enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	esv3440613	chr13:53307609-53671072	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv455889	chr13:53419139-53466127	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
4	nsv561661	chr13:53419139-53466127	Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
5	nsv900090	chr13:53429453-53495715	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:53448800-53455200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr13:53449800-53455000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr13:53450000-53454600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr13:53451400-53455600	Weak transcription	Pancreas	Pancrea
5	chr13:53452800-53455600	Enhancers	Fetal Stomach	stomach
6	chr13:53453000-53454600	Enhancers	Brain Germinal Matrix	brain
7	chr13:53453200-53455000	Weak transcription	Fetal Muscle Leg	muscle
8	chr13:53453200-53466600	Weak transcription	Fetal Brain Female	brain
9	chr13:53453800-53455200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
10	chr13:53453800-53455600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr13:53453800-53455600	Enhancers	Ovary	ovary
12	chr13:53454000-53455400	Bivalent Enhancer	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr13:53454200-53457400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr13:53454400-53454600	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
15	chr13:53454400-53454600	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
16	chr13:53454400-53454600	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
17	chr13:53454400-53454600	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
18	chr13:53454400-53454600	Enhancers	Stomach Smooth Muscle	stomach
19	chr13:53454400-53454800	Active TSS	ES-I3 Cell Line	embryonic stem cell
20	chr13:53454400-53455000	Enhancers	Fetal Kidney	kidney
21	chr13:53454400-53455200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
22	chr13:53454400-53455400	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr13:53454400-53455600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links