Variant report

Variant	rs7981526
Chromosome Location	chr13:30824359-30824360
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30824022..30825718-chr13:31192068..31194588,2	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11841870	1.00[YRI][hapmap]
rs17074481	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs6490447	1.00[AMR][1000 genomes]
rs6490448	1.00[AMR][1000 genomes]
rs7327225	0.96[AFR][1000 genomes]
rs7330252	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7331369	0.85[YRI][hapmap];0.96[AFR][1000 genomes]
rs7331654	1.00[AMR][1000 genomes]
rs7331974	1.00[AMR][1000 genomes]
rs7335936	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs8002236	1.00[AMR][1000 genomes]
rs8002503	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9550539	1.00[YRI][hapmap]
rs9741248	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832572	chr13:30650005-30835256	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30791000-30831400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:30796800-30831400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:30799200-30831400	Weak transcription	Aorta	Aorta
4	chr13:30799400-30831600	Weak transcription	Right Ventricle	heart
5	chr13:30799600-30845200	Weak transcription	HMEC	breast
6	chr13:30803000-30831400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr13:30803400-30827800	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr13:30803600-30830400	Weak transcription	Fetal Heart	heart
9	chr13:30803600-30831400	Weak transcription	Rectal Smooth Muscle	rectum
10	chr13:30804400-30831600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr13:30805600-30831600	Weak transcription	Left Ventricle	heart
12	chr13:30805600-30831600	Weak transcription	Stomach Smooth Muscle	stomach
13	chr13:30805600-30841800	Weak transcription	Ovary	ovary
14	chr13:30805600-30853200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr13:30810000-30831600	Weak transcription	NHLF	lung
16	chr13:30810600-30849200	Weak transcription	Fetal Muscle Trunk	muscle
17	chr13:30813000-30827800	Weak transcription	HUVEC	blood vessel
18	chr13:30813000-30849000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:30814800-30831400	Weak transcription	NH-A	brain
20	chr13:30816000-30827800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr13:30820600-30831800	Weak transcription	Primary T helper cells PMA-I stimulated	--
22	chr13:30820600-30831800	Weak transcription	HSMMtube	muscle
23	chr13:30822400-30833600	Weak transcription	K562	blood
24	chr13:30822800-30824800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr13:30822800-30834000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr13:30823000-30824800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr13:30823200-30824400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr13:30823200-30824400	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
29	chr13:30823200-30824400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr13:30823200-30825000	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
31	chr13:30823400-30824400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
32	chr13:30823400-30824600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr13:30823400-30824800	ZNF genes & repeats	Dnd41	blood
34	chr13:30823400-30825000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr13:30823400-30825000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
36	chr13:30823400-30826000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr13:30823400-30831000	Weak transcription	Fetal Stomach	stomach
38	chr13:30823400-30831600	Weak transcription	Sigmoid Colon	Sigmoid Colon
39	chr13:30823600-30824400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
40	chr13:30823600-30824400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr13:30823600-30825000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
42	chr13:30823600-30825600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr13:30823600-30831200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr13:30823600-30831600	Weak transcription	Fetal Brain Male	brain
45	chr13:30823600-30849200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr13:30823600-30849200	Weak transcription	HSMM	muscle
47	chr13:30823800-30824600	ZNF genes & repeats	NHDF-Ad	bronchial
48	chr13:30823800-30828000	Weak transcription	Fetal Thymus	thymus
49	chr13:30823800-30830600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr13:30823800-30833800	Weak transcription	NHEK	skin

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