Variant report

Variant	rs7981743
Chromosome Location	chr13:51463461-51463462
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs2408213	0.91[CHB][hapmap];0.86[ASN][1000 genomes]
rs6561598	0.87[CHB][hapmap];0.91[ASN][1000 genomes]
rs6561599	0.82[ASN][1000 genomes]
rs7316976	1.00[CEU][hapmap];0.80[YRI][hapmap];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs737343	0.91[CHB][hapmap];0.84[ASN][1000 genomes]
rs7985661	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7999948	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs931004	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9535518	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900077	chr13:51446114-51514831	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv900078	chr13:51454896-51478716	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:51457200-51464600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr13:51461200-51465200	Weak transcription	Aorta	Aorta
3	chr13:51461200-51465400	Enhancers	GM12878-XiMat	blood
4	chr13:51461600-51464200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr13:51461800-51464400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr13:51462000-51463600	Weak transcription	Primary hematopoietic stem cells	blood
7	chr13:51462000-51464400	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr13:51462000-51464600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr13:51462000-51466200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr13:51462200-51463600	Weak transcription	Primary B cells from cord blood	blood
11	chr13:51462600-51464600	Enhancers	Dnd41	blood
12	chr13:51463400-51463600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:51463400-51465600	Enhancers	Thymus	Thymus
14	chr13:51463400-51465800	Enhancers	Fetal Thymus	thymus
15	chr13:51463400-51466400	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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