Variant report

Variant	rs7984545
Chromosome Location	chr13:54948917-54948918
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs4517664	0.87[EUR][1000 genomes]
rs55970996	0.87[EUR][1000 genomes]
rs56004004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57955841	0.87[EUR][1000 genomes]
rs7139550	1.00[ASN][1000 genomes]
rs7328532	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7331152	1.00[ASN][1000 genomes]
rs7336890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7994125	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
2	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54946400-54949600	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr13:54947000-54949200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr13:54947000-54949200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr13:54947000-54949400	Enhancers	Fetal Brain Male	brain
5	chr13:54947200-54949000	Enhancers	Brain Germinal Matrix	brain
6	chr13:54947200-54949200	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr13:54947200-54949200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
8	chr13:54947200-54949200	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr13:54947200-54950600	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr13:54947400-54949000	Enhancers	Fetal Brain Female	brain
11	chr13:54947400-54949200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr13:54947400-54949600	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:54947600-54949400	Enhancers	H9 Cell Line	embryonic stem cell
14	chr13:54947600-54949400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr13:54948000-54949200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr13:54948000-54949200	Enhancers	Adipose Nuclei	Adipose
17	chr13:54948200-54949600	Enhancers	HUES48 Cell Line	embryonic stem cell
18	chr13:54948400-54949400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr13:54948600-54949200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
20	chr13:54948800-54949200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr13:54948800-54949200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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