Variant report

Variant	rs7984633
Chromosome Location	chr13:85232850-85232851
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10161991	1.00[AMR][1000 genomes]
rs12017137	1.00[AMR][1000 genomes]
rs17078329	1.00[AMR][1000 genomes]
rs7139614	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7320733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73532253	1.00[AMR][1000 genomes]
rs7999386	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv456046	chr13:84971270-85262508	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv562561	chr13:84971270-85262508	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv900691	chr13:85206473-85294881	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1851778	chr13:85206473-85299207	Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv900692	chr13:85218788-85294881	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv900693	chr13:85226116-85291768	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv900694	chr13:85226116-85344527	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85226000-85233400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:85229800-85234200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr13:85230200-85233200	Weak transcription	NH-A	brain
4	chr13:85230400-85236000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr13:85230600-85235800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr13:85230600-85236000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr13:85230800-85235800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr13:85231400-85235400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr13:85231600-85233200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr13:85231600-85235400	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr13:85231800-85233000	Weak transcription	Primary hematopoietic stem cells	blood
12	chr13:85232200-85234000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr13:85232600-85233600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr13:85232600-85233600	Enhancers	Hela-S3	cervix
15	chr13:85232800-85233600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr13:85232800-85233600	Enhancers	Osteobl	bone

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links