Variant report

Variant	rs79869824
Chromosome Location	chr9:85834837-85834838
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:85818705..85819261-chr9:85834295..85835039,2	MCF-7	breast:
2	chr9:85834296..85835171-chr9:85845740..85846677,8	MCF-7	breast:
3	chr9:85576162..85576940-chr9:85834338..85835195,3	MCF-7	breast:
4	chr9:85813794..85816602-chr9:85833659..85835490,2	MCF-7	breast:
5	chr9:85834318..85834922-chr9:85942136..85942786,2	MCF-7	breast:
6	chr9:85834525..85835178-chr9:86153175..86154166,3	MCF-7	breast:
7	chr9:85834621..85835782-chr9:86211520..86212262,3	MCF-7	breast:
8	chr9:85832727..85836639-chr9:86319596..86323973,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000251776	Chromatin interaction
ENSG00000254473	Chromatin interaction
ENSG00000172159	Chromatin interaction
ENSG00000135018	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv818710	chr9:85834312-85835108	Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Weak transcription	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:105 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:85833600-85835000	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr9:85833600-85835600	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr9:85833800-85835000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr9:85833800-85835000	Bivalent/Poised TSS	Primary T cells from cord blood	blood
5	chr9:85833800-85835000	Active TSS	Lung	lung
6	chr9:85833800-85835000	Active TSS	Pancreas	Pancrea
7	chr9:85833800-85835200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr9:85834000-85835000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:85834000-85835000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:85834000-85835000	Active TSS	Breast Myoepithelial Primary Cells	Breast
11	chr9:85834000-85835000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
12	chr9:85834000-85835000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr9:85834000-85835000	Active TSS	Muscle Satellite Cultured Cells	--
14	chr9:85834000-85835000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr9:85834000-85835000	Active TSS	Brain Anterior Caudate	brain
16	chr9:85834000-85835000	Active TSS	Brain Cingulate Gyrus	brain
17	chr9:85834000-85835000	Active TSS	Fetal Intestine Large	intestine
18	chr9:85834000-85835000	Active TSS	Fetal Intestine Small	intestine
19	chr9:85834000-85835000	Active TSS	Fetal Kidney	kidney
20	chr9:85834000-85835000	Active TSS	Fetal Stomach	stomach
21	chr9:85834000-85835000	Active TSS	Left Ventricle	heart
22	chr9:85834000-85835000	Active TSS	Ovary	ovary
23	chr9:85834000-85835000	Active TSS	Psoas Muscle	Psoas
24	chr9:85834000-85835000	Active TSS	Rectal Mucosa Donor 29	rectum
25	chr9:85834000-85835000	Active TSS	Rectal Smooth Muscle	rectum
26	chr9:85834000-85835000	Active TSS	Right Atrium	heart
27	chr9:85834000-85835000	Active TSS	Right Ventricle	heart
28	chr9:85834000-85835000	Active TSS	HSMMtube	muscle
29	chr9:85834000-85835200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr9:85834000-85835200	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr9:85834000-85835200	Flanking Active TSS	Adipose Nuclei	Adipose
32	chr9:85834000-85835200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:85834000-85835200	Active TSS	Brain Substantia Nigra	brain
34	chr9:85834000-85835200	Active TSS	Colonic Mucosa	Colon
35	chr9:85834000-85835200	Active TSS	NHLF	lung
36	chr9:85834000-85835400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr9:85834000-85835400	Active TSS	Brain Inferior Temporal Lobe	brain
38	chr9:85834200-85835000	Active TSS	ES-I3 Cell Line	embryonic stem cell
39	chr9:85834200-85835000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr9:85834200-85835000	Flanking Bivalent TSS/Enh	Primary neutrophils fromperipheralblood	blood
41	chr9:85834200-85835000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
42	chr9:85834200-85835000	Active TSS	Brain Germinal Matrix	brain
43	chr9:85834200-85835000	Active TSS	Rectal Mucosa Donor 31	rectum
44	chr9:85834200-85835000	Active TSS	Spleen	Spleen
45	chr9:85834200-85835200	Active TSS	H1 Cell Line	embryonic stem cell
46	chr9:85834200-85835200	Active TSS	H9 Cell Line	embryonic stem cell
47	chr9:85834200-85835200	Flanking Active TSS	Primary hematopoietic stem cells	blood
48	chr9:85834200-85835200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
49	chr9:85834200-85835200	Active TSS	Gastric	stomach
50	chr9:85834200-85835200	Active TSS	Stomach Smooth Muscle	stomach

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