Variant report

Variant	rs7987643
Chromosome Location	chr13:96184485-96184486
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1977359	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7321287	0.86[AFR][1000 genomes]
rs74109008	1.00[EUR][1000 genomes]
rs9516598	1.00[AMR][1000 genomes]
rs9516599	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9525009	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9556487	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv900933	chr13:96138087-96215289	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv525760	chr13:96176034-96186575	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:96181200-96185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr13:96182400-96185200	Enhancers	A549	lung
3	chr13:96182600-96186400	Weak transcription	NH-A	brain
4	chr13:96182600-96187600	Weak transcription	HSMMtube	muscle
5	chr13:96182800-96184600	Weak transcription	Fetal Lung	lung
6	chr13:96182800-96185800	Weak transcription	HepG2	liver
7	chr13:96182800-96186000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr13:96183000-96185800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr13:96183000-96186000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr13:96183000-96186200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr13:96183000-96187000	Weak transcription	HMEC	breast
12	chr13:96183000-96187200	Weak transcription	Hela-S3	cervix
13	chr13:96183000-96187400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr13:96183000-96188800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr13:96183000-96192800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr13:96183200-96185800	Weak transcription	HUVEC	blood vessel
17	chr13:96183400-96185800	Weak transcription	Pancreas	Pancrea
18	chr13:96183600-96187200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr13:96184200-96184600	Enhancers	Osteobl	bone
20	chr13:96184200-96187200	Weak transcription	NHDF-Ad	bronchial
21	chr13:96184400-96184800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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