Variant report

Variant	rs798871
Chromosome Location	chr14:81848947-81848948
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:81847233..81850100-chr14:81861547..81864501,2	MCF-7	breast:
2	chr14:81842586..81845398-chr14:81847649..81849173,2	MCF-7	breast:
3	chr14:81847525..81850212-chr14:81854009..81856380,2	MCF-7	breast:
4	chr14:81848326..81851225-chr14:81856125..81857650,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3358936	chr14:81786719-81928269	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	n/a
2	nsv902119	chr14:81810945-81884857	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv1047694	chr14:81831147-82534026	Enhancers Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
4	nsv542145	chr14:81831147-82534026	Weak transcription Active TSS Genic enhancers Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	esv3359683	chr14:81848776-81849217	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:81831000-81849400	Weak transcription	Fetal Kidney	kidney
2	chr14:81833200-81850800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:81833200-81858400	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr14:81834200-81859200	Weak transcription	Placenta	Placenta
5	chr14:81835800-81851200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr14:81836400-81885800	Weak transcription	Gastric	stomach
7	chr14:81837000-81858800	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr14:81837600-81849400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:81837600-81850200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr14:81837600-81850800	Weak transcription	Esophagus	oesophagus
11	chr14:81837600-81856200	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:81844800-81851000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
13	chr14:81847000-81851200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr14:81847000-81851400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr14:81847000-81852200	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr14:81847200-81851200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr14:81847200-81855000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr14:81847200-81855200	Weak transcription	Primary hematopoietic stem cells	blood
19	chr14:81847200-81856800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr14:81847400-81851000	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr14:81847800-81850000	Strong transcription	K562	blood
22	chr14:81848200-81849000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr14:81848200-81849000	Weak transcription	Adipose Nuclei	Adipose
24	chr14:81848200-81850200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
25	chr14:81848400-81852000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr14:81848600-81850000	Enhancers	Brain Anterior Caudate	brain
27	chr14:81848800-81849200	Enhancers	HMEC	breast
28	chr14:81848800-81849400	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:81848800-81849600	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr14:81848800-81849600	Flanking Active TSS	NHEK	skin
31	chr14:81848800-81850200	Enhancers	Breast Myoepithelial Primary Cells	Breast

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