Variant report

Variant	rs79890820
Chromosome Location	chr11:67139779-67139780
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZBTB7A	chr11:67139504-67140234	ECC-1	luminal epithelium:	n/a	n/a
2	POLR2A	chr11:67138563-67140098	HL-60	blood:	n/a	n/a
3	ZBTB7A	chr11:67139523-67139979	K562	blood:	n/a	n/a
4	SP1	chr11:67138681-67140293	A549	lung:	n/a	chr11:67139670-67139684 chr11:67139762-67139776 chr11:67139211-67139221
5	SIN3AK20	chr11:67139644-67140072	PANC-1	pancreas:	n/a	n/a
6	BCL3	chr11:67138621-67140141	A549	lung:	n/a	chr11:67139091-67139104
7	POLR2A	chr11:67134317-67140357	U87	brain:	n/a	n/a
8	EP300	chr11:67138695-67140234	A549	lung:	n/a	chr11:67140185-67140201
9	TAF1	chr11:67138969-67141226	A549	lung:	n/a	n/a
10	POLR2A	chr11:67138593-67142764	PANC-1	pancreas:	n/a	n/a
11	REST	chr11:67138541-67140080	A549	lung:	n/a	n/a
12	RAD21	chr11:67138772-67139839	A549	lung:	n/a	chr11:67139107-67139117 chr11:67139136-67139150 chr11:67139066-67139075
13	TCF12	chr11:67137930-67144339	A549	lung:	n/a	chr11:67138193-67138203 chr11:67139958-67139965 chr11:67139242-67139249 chr11:67141661-67141671 chr11:67144056-67144066 chr11:67138192-67138199 chr11:67142524-67142532 chr11:67139957-67139967 chr11:67142516-67142526 chr11:67139956-67139963
14	POLR2A	chr11:67138898-67140078	A549	lung:	n/a	n/a
15	POLR2A	chr11:67138915-67142701	MCF-7	breast:	n/a	n/a
16	HMGN3	chr11:67139719-67139919	K562	blood:	n/a	n/a
17	CREB1	chr11:67139769-67140555	A549	lung:	n/a	n/a
18	SP1	chr11:67138783-67140235	A549	lung:	n/a	chr11:67139670-67139684 chr11:67139762-67139776 chr11:67139211-67139221
19	POLR2A	chr11:67139773-67139912	ProgFib	skin:	n/a	n/a
20	MXI1	chr11:67136428-67142794	IMR90	lung:	n/a	n/a
21	MAX	chr11:67139387-67141420	K562	blood:	n/a	chr11:67141256-67141266 chr11:67141367-67141377
22	POLR2A	chr11:67137865-67142671	K562	blood:	n/a	n/a
23	E2F6	chr11:67139696-67141023	K562	blood:	n/a	chr11:67140264-67140275 chr11:67140158-67140165 chr11:67140336-67140346 chr11:67140266-67140274 chr11:67140791-67140801 chr11:67140158-67140165 chr11:67140266-67140274 chr11:67140600-67140611 chr11:67140265-67140275 chr11:67140267-67140274 chr11:67140158-67140165
24	CTCF	chr11:67138358-67139875	A549	lung:	n/a	chr11:67139137-67139150
25	POLR2A	chr11:67139559-67139886	SK-N-SH	brain:	n/a	n/a
26	MAZ	chr11:67138879-67142345	K562	blood:	n/a	chr11:67141256-67141266 chr11:67141367-67141377 chr11:67139214-67139223
27	POLR2A	chr11:67139762-67142124	HUVEC	blood vessel:	n/a	n/a
28	POLR2A	chr11:67138754-67139881	U87	brain:	n/a	n/a
29	PBX3	chr11:67138788-67140664	A549	lung:	n/a	n/a
30	REST	chr11:67139758-67140030	A549	lung:	n/a	n/a
31	ZBTB7A	chr11:67139611-67142343	K562	blood:	n/a	n/a
32	ZBTB7A	chr11:67138888-67140220	ECC-1	luminal epithelium:	n/a	n/a
33	POLR2A	chr11:67135652-67140351	U87	brain:	n/a	n/a
34	POLR2A	chr11:67138770-67141183	A549	lung:	n/a	n/a
35	MAX	chr11:67137318-67145655	A549	lung:	n/a	chr11:67138167-67138177 chr11:67141256-67141266 chr11:67138019-67138029 chr11:67141367-67141377 chr11:67139214-67139223
36	JUND	chr11:67138885-67143692	A549	lung:	n/a	chr11:67141685-67141694 chr11:67141991-67142001 chr11:67141990-67142002 chr11:67141990-67142001 chr11:67141992-67142000 chr11:67141993-67142004 chr11:67142329-67142340 chr11:67141991-67142001 chr11:67140956-67140965 chr11:67142827-67142836 chr11:67141991-67142001
37	ZBTB7A	chr11:67139670-67139802	HepG2	liver:	n/a	n/a
38	MAX	chr11:67138561-67140292	A549	lung:	n/a	chr11:67139214-67139223
39	POLR2A	chr11:67138788-67140062	PANC-1	pancreas:	n/a	n/a
40	POLR2A	chr11:67137182-67142767	K562	blood:	n/a	n/a
41	POLR2A	chr11:67139658-67139884	K562	blood:	n/a	n/a
42	PBX3	chr11:67139105-67140403	A549	lung:	n/a	n/a
43	POLR2A	chr11:67138865-67140076	A549	lung:	n/a	n/a
44	GATA3	chr11:67138557-67145601	A549	lung:	n/a	n/a
45	MAZ	chr11:67138423-67143309	IMR90	lung:	n/a	chr11:67141256-67141266 chr11:67141367-67141377 chr11:67139214-67139223

No.	Distal block	Cell Line	Cell type
1	chr11:67085099..67087143-chr11:67137966..67139875,2	K562	blood:
2	chr11:67138591..67140616-chr11:67149692..67150721,9	MCF-7	breast:
3	chr11:66821897..66826528-chr11:67139094..67144065,11	MCF-7	breast:
4	chr11:67138235..67140028-chr11:67271265..67273106,2	MCF-7	breast:
5	chr11:67031846..67035344-chr11:67139453..67142374,3	K562	blood:
6	chr11:66622570..66624423-chr11:67139168..67140990,2	MCF-7	breast:
7	chr11:67006828..67010582-chr11:67138867..67142453,4	MCF-7	breast:
8	chr11:67053474..67057507-chr11:67138689..67143945,8	MCF-7	breast:
9	chr11:67138872..67142169-chr11:67249496..67254071,4	MCF-7	breast:
10	chr11:66788543..66790931-chr11:67139607..67141552,2	MCF-7	breast:
11	chr11:66823034..66824892-chr11:67139520..67142366,3	MCF-7	breast:
12	chr11:66845534..66847277-chr11:67139384..67140950,2	MCF-7	breast:
13	chr11:67139479..67140053-chr11:67149261..67150255,2	K562	blood:
14	chr11:67139765..67142051-chr17:57918264..57920706,2	MCF-7	breast:
15	chr11:67137032..67142528-chr11:67234580..67238729,6	MCF-7	breast:
16	chr11:67138903..67140672-chr11:67189332..67192243,2	K562	blood:
17	chr11:67006855..67009254-chr11:67139637..67141684,2	MCF-7	breast:
18	chr11:67138865..67141337-chr11:67205315..67206965,2	K562	blood:
19	chr11:67138430..67143112-chr11:67157518..67161987,7	K562	blood:
20	chr11:67139501..67142119-chr16:3071898..3074181,2	MCF-7	breast:
21	chr11:67070466..67072644-chr11:67139702..67142015,2	K562	blood:
22	chr11:67088208..67091047-chr11:67138396..67140194,2	MCF-7	breast:
23	chr11:67139623..67143035-chr11:67167894..67169679,3	K562	blood:
24	chr11:67069839..67071996-chr11:67139740..67141397,2	MCF-7	breast:
25	chr11:67138420..67140492-chr11:67271610..67274474,2	K562	blood:
26	chr11:67138426..67140382-chr11:67217472..67219205,2	K562	blood:
27	chr11:67069246..67073295-chr11:67139634..67145393,8	MCF-7	breast:
28	chr11:67044106..67046398-chr11:67138784..67140765,2	K562	blood:
29	chr11:67078342..67081725-chr11:67139517..67143464,5	MCF-7	breast:
30	chr11:66886882..66888512-chr11:67137835..67140678,2	MCF-7	breast:
31	chr11:67030856..67037366-chr11:67138319..67144892,13	MCF-7	breast:
32	chr11:67116951..67127260-chr11:67135118..67146037,42	K562	blood:
33	chr11:67139414..67143301-chr11:67273275..67276817,6	MCF-7	breast:

Variant related genes	Relation type
CLCF1	TF binding region
ENSG00000172663	Chromatin interaction
ENSG00000110711	Chromatin interaction
ENSG00000173120	Chromatin interaction
ENSG00000175482	Chromatin interaction
ENSG00000173156	Chromatin interaction
ENSG00000173227	Chromatin interaction
ENSG00000172830	Chromatin interaction
ENSG00000103145	Chromatin interaction
ENSG00000172613	Chromatin interaction
ENSG00000173020	Chromatin interaction
ENSG00000173621	Chromatin interaction
ENSG00000199004	Chromatin interaction
ENSG00000110697	Chromatin interaction
ENSG00000167797	Chromatin interaction
ENSG00000172932	Chromatin interaction
ENSG00000172531	Chromatin interaction
ENSG00000131652	Chromatin interaction
ENSG00000213402	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531397	chr11:66653381-67465721	Active TSS Enhancers Strong transcription Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	271 gene(s)	inside rSNPs	diseases
2	nsv933183	chr11:67008447-67160993	Flanking Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
3	nsv897796	chr11:67021518-67186000	Weak transcription Strong transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
4	nsv897797	chr11:67023040-67293234	Flanking Active TSS Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	206 gene(s)	inside rSNPs	diseases
5	nsv1043037	chr11:67027193-67357425	Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
6	nsv468603	chr11:67033076-67164495	Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
7	nsv555253	chr11:67033076-67164495	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	nsv897801	chr11:67033076-67432479	Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	236 gene(s)	inside rSNPs	diseases
9	nsv1047890	chr11:67058231-67184436	Flanking Active TSS Enhancers Strong transcription Genic enhancers Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	88 gene(s)	inside rSNPs	diseases
10	nsv1048230	chr11:67058231-67252397	Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	146 gene(s)	inside rSNPs	diseases
11	nsv897804	chr11:67090571-67224278	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	103 gene(s)	inside rSNPs	diseases
12	nsv1039205	chr11:67135246-67252397	Enhancers Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
13	esv1818769	chr11:67138811-67300457	Flanking Active TSS Active TSS Genic enhancers Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	167 gene(s)	inside rSNPs	diseases
14	esv3404685	chr11:67139076-67142024	Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases
15	esv3326147	chr11:67139201-67141749	Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases
16	esv3323213	chr11:67139601-67142149	Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:67136200-67139800	Weak transcription	NHEK	skin
2	chr11:67136600-67140000	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:67136800-67139800	Transcr. at gene 5' and 3'	A549	lung
4	chr11:67136800-67143600	Bivalent Enhancer	Fetal Thymus	thymus
5	chr11:67137000-67140000	Flanking Active TSS	Stomach Smooth Muscle	stomach
6	chr11:67137400-67139800	Enhancers	Fetal Heart	heart
7	chr11:67137600-67140200	Bivalent Enhancer	Dnd41	blood
8	chr11:67137800-67139800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr11:67138000-67139800	Flanking Active TSS	Colon Smooth Muscle	Colon
10	chr11:67138000-67139800	Enhancers	Stomach Mucosa	stomach
11	chr11:67138000-67139800	Flanking Active TSS	NHLF	lung
12	chr11:67138000-67140000	Flanking Active TSS	NH-A	brain
13	chr11:67138200-67139800	Flanking Active TSS	Fetal Lung	lung
14	chr11:67138200-67140000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:67138200-67140000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr11:67138400-67139800	Flanking Active TSS	Placenta Amnion	Placenta Amnion
17	chr11:67138400-67140000	Flanking Active TSS	Hela-S3	cervix
18	chr11:67138800-67139800	Enhancers	Liver	Liver
19	chr11:67138800-67139800	Enhancers	Brain Angular Gyrus	brain
20	chr11:67138800-67139800	Flanking Active TSS	Fetal Intestine Small	intestine
21	chr11:67138800-67139800	Flanking Active TSS	HMEC	breast
22	chr11:67138800-67140000	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr11:67138800-67140000	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
24	chr11:67138800-67140000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
25	chr11:67139000-67139800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr11:67139000-67139800	Transcr. at gene 5' and 3'	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr11:67139000-67139800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
28	chr11:67139000-67140000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
29	chr11:67139000-67140000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
30	chr11:67139000-67140000	Flanking Active TSS	Primary B cells from peripheral blood	blood
31	chr11:67139000-67140000	Flanking Active TSS	Colonic Mucosa	Colon
32	chr11:67139000-67140000	Flanking Active TSS	Pancreas	Pancrea
33	chr11:67139000-67140000	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
34	chr11:67139000-67140200	Enhancers	Brain Cingulate Gyrus	brain
35	chr11:67139000-67141600	Active TSS	HSMMtube	muscle
36	chr11:67139200-67139800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:67139200-67139800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
38	chr11:67139200-67139800	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
39	chr11:67139200-67139800	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr11:67139200-67139800	Flanking Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr11:67139200-67139800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
42	chr11:67139200-67139800	Flanking Active TSS	Lung	lung
43	chr11:67139200-67140000	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr11:67139200-67140000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr11:67139200-67140000	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
46	chr11:67139200-67140000	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
47	chr11:67139200-67140000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
48	chr11:67139200-67140000	Flanking Active TSS	Brain Anterior Caudate	brain
49	chr11:67139200-67140000	Bivalent Enhancer	Brain Inferior Temporal Lobe	brain
50	chr11:67139200-67140000	Flanking Active TSS	Duodenum Mucosa	Duodenum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links