Variant report

Variant	rs7989243
Chromosome Location	chr13:38347601-38347602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38346843..38348685-chr13:38354184..38356149,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs17056589	0.94[ASN][1000 genomes]
rs17056592	0.94[ASN][1000 genomes]
rs17056593	0.94[ASN][1000 genomes]
rs17056596	0.94[ASN][1000 genomes]
rs17056597	0.94[ASN][1000 genomes]
rs17056599	0.94[ASN][1000 genomes]
rs17056602	0.94[ASN][1000 genomes]
rs17056604	0.94[ASN][1000 genomes]
rs17056607	0.94[ASN][1000 genomes]
rs17056611	0.94[ASN][1000 genomes]
rs17056616	0.94[ASN][1000 genomes]
rs17056618	0.94[ASN][1000 genomes]
rs17056620	0.94[ASN][1000 genomes]
rs17056621	0.94[ASN][1000 genomes]
rs17056623	0.94[ASN][1000 genomes]
rs17056628	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2008441	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2039432	0.94[ASN][1000 genomes]
rs55759424	0.83[ASN][1000 genomes]
rs55875351	0.94[ASN][1000 genomes]
rs56173772	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56340219	0.94[ASN][1000 genomes]
rs57460722	0.94[ASN][1000 genomes]
rs61327726	0.94[ASN][1000 genomes]
rs61364839	0.88[ASN][1000 genomes]
rs6650361	0.94[ASN][1000 genomes]
rs6650468	0.89[ASN][1000 genomes]
rs73168454	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168457	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168462	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168464	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168467	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168468	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73168471	0.88[ASN][1000 genomes]
rs73168476	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73168478	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73168481	0.94[ASN][1000 genomes]
rs73168482	0.94[ASN][1000 genomes]
rs73168484	0.94[ASN][1000 genomes]
rs73168485	0.94[ASN][1000 genomes]
rs73168486	0.94[ASN][1000 genomes]
rs73168487	0.94[ASN][1000 genomes]
rs7331261	0.83[ASN][1000 genomes]
rs7990029	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	esv2753974	chr13:38341331-38363450	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38341000-38349800	Weak transcription	Osteobl	bone
2	chr13:38342800-38349800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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