Variant report

Variant	rs79913422
Chromosome Location	chr3:140007794-140007795
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432486	chr3:139924092-140049121	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv2757891	chr3:139925764-140524730	Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	esv2759181	chr3:139925764-140524730	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv829740	chr3:139925767-140106169	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv527831	chr3:139932966-140533823	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv460867	chr3:140007294-140180563	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv591861	chr3:140007294-140180563	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1013526	chr3:140007795-140007796	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:139999600-140015600	Weak transcription	Pancreas	Pancrea
2	chr3:140003600-140009400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr3:140004400-140009200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:140004400-140015600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:140004600-140008800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr3:140004800-140008800	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr3:140004800-140009200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr3:140004800-140015600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr3:140005000-140007800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:140006600-140010600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:140006800-140013400	Enhancers	HMEC	breast
12	chr3:140007000-140010600	Enhancers	NHEK	skin
13	chr3:140007000-140012400	Enhancers	NHDF-Ad	bronchial
14	chr3:140007200-140008000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr3:140007200-140008000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:140007200-140008000	Enhancers	NH-A	brain
17	chr3:140007200-140008600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:140007200-140010000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr3:140007200-140010400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:140007200-140012400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr3:140007400-140007800	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr3:140007400-140007800	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr3:140007400-140007800	Enhancers	HSMMtube	muscle
24	chr3:140007400-140007800	Enhancers	NHLF	lung
25	chr3:140007400-140008000	Enhancers	HSMM	muscle
26	chr3:140007600-140008000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr3:140007600-140008800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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