Variant report
| Variant | rs7991512 |
|---|---|
| Chromosome Location | chr13:39047292-39047293 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:29)
| rs_ID | r2[population] |
|---|---|
| rs1330959 | 1.00[AMR][1000 genomes] |
| rs2218718 | 1.00[AMR][1000 genomes] |
| rs2455409 | 1.00[AMR][1000 genomes] |
| rs2455411 | 1.00[AMR][1000 genomes] |
| rs2481878 | 1.00[AMR][1000 genomes] |
| rs2481881 | 1.00[AMR][1000 genomes] |
| rs2481882 | 1.00[AMR][1000 genomes] |
| rs2481883 | 1.00[AMR][1000 genomes] |
| rs2485772 | 1.00[AMR][1000 genomes] |
| rs2485776 | 1.00[AMR][1000 genomes] |
| rs2485781 | 1.00[AMR][1000 genomes] |
| rs2485784 | 1.00[AMR][1000 genomes] |
| rs2485787 | 1.00[AMR][1000 genomes] |
| rs2496412 | 1.00[AMR][1000 genomes] |
| rs2496431 | 1.00[AMR][1000 genomes] |
| rs2496460 | 1.00[AMR][1000 genomes] |
| rs2496467 | 1.00[AMR][1000 genomes] |
| rs2496469 | 1.00[AMR][1000 genomes] |
| rs2496472 | 1.00[AMR][1000 genomes] |
| rs2496474 | 1.00[AMR][1000 genomes] |
| rs59701754 | 1.00[AMR][1000 genomes] |
| rs672502 | 1.00[AMR][1000 genomes] |
| rs685649 | 1.00[AMR][1000 genomes] |
| rs73466319 | 1.00[AMR][1000 genomes] |
| rs74047556 | 1.00[AMR][1000 genomes] |
| rs9594272 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9594277 | 1.00[AMR][1000 genomes] |
| rs9603377 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9603379 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv869125 | chr13:38550449-39132813 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
| 2 | esv1817566 | chr13:39021562-39081413 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | esv1828009 | chr13:39021562-39081413 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv561513 | chr13:39022191-39060049 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv561514 | chr13:39033242-39064286 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv1800401 | chr13:39045401-39060049 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 7 | esv1803634 | chr13:39045401-39060049 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 8 | esv1831414 | chr13:39045401-39060049 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:39046200-39061800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
