Variant report

Variant	rs7991965
Chromosome Location	chr13:84804942-84804943
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17077847	0.92[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs7337340	0.88[EUR][1000 genomes]
rs9546628	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1038880	chr13:84632431-84861839	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv949402	chr13:84675752-85606846	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1044494	chr13:84705200-84897141	Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv832664	chr13:84796715-84954393	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv456045	chr13:84801379-84807007	Enhancers	n/a	n/a	inside rSNPs	diseases
6	nsv562559	chr13:84801379-84807007	Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:84804400-84805000	Enhancers	iPS-18 Cell Line	embryonic stem cell
2	chr13:84804400-84805000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
3	chr13:84804400-84805400	Enhancers	HUES64 Cell Line	embryonic stem cell
4	chr13:84804400-84805400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr13:84804600-84805200	Enhancers	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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