Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12584722	0.88[ASN][1000 genomes]
rs36101238	0.81[ASN][1000 genomes]
rs4359326	0.90[ASN][1000 genomes]
rs4441145	0.92[ASN][1000 genomes]
rs4592544	0.88[ASN][1000 genomes]
rs4884962	0.87[ASN][1000 genomes]
rs4884964	0.90[ASN][1000 genomes]
rs7328868	0.90[ASN][1000 genomes]
rs7331635	0.92[ASN][1000 genomes]
rs7993684	0.90[ASN][1000 genomes]
rs9316712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9527191	0.90[ASN][1000 genomes]
rs9536679	0.89[ASN][1000 genomes]
rs9536681	0.90[ASN][1000 genomes]
rs9536682	0.90[ASN][1000 genomes]
rs9563209	0.90[ASN][1000 genomes]
rs9563211	0.90[ASN][1000 genomes]
rs9563212	0.90[ASN][1000 genomes]
rs9569014	0.87[ASN][1000 genomes]
rs9569015	0.89[ASN][1000 genomes]
rs9569016	0.92[ASN][1000 genomes]
rs9591581	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3375545	chr13:54517432-54908108	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1051063	chr13:54777487-54997866	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv541778	chr13:54777487-54997866	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA	2 gene(s)	inside rSNPs	diseases
4	esv3349795	chr13:54892694-55252030	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv523882	chr13:54895699-54898201	Enhancers Weak transcription Strong transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:54880000-54929800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr13:54889800-54898400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr13:54892600-54903800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr13:54892800-54923000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:54895800-54901600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr13:54896400-54898400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr13:54896600-54903000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr13:54896800-54898800	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr13:54897000-54898600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr13:54897200-54898600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr13:54897200-54898600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr13:54897400-54898800	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr13:54898000-54901400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr13:54898200-54902800	Weak transcription	Fetal Heart	heart
15	chr13:54898200-54903400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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