Variant report

Variant	rs79958712
Chromosome Location	chr9:118158853-118158854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv948346	chr9:118107565-118718197	Enhancers Bivalent Enhancer Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
3	nsv1042957	chr9:118153824-118313540	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2761245	chr9:118157164-118171298	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
5	nsv519995	chr9:118157729-118163797	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118154600-118161800	Weak transcription	Fetal Kidney	kidney
2	chr9:118154800-118159800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr9:118155800-118159000	Enhancers	NHDF-Ad	bronchial
4	chr9:118155800-118159400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr9:118155800-118159600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:118156200-118159000	Enhancers	NHEK	skin
7	chr9:118156200-118159200	Enhancers	HMEC	breast
8	chr9:118156600-118159200	Enhancers	Osteobl	bone
9	chr9:118156800-118159000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr9:118157000-118159200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr9:118157400-118162200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr9:118157600-118159000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr9:118157600-118159000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
14	chr9:118157600-118159000	Enhancers	Fetal Lung	lung
15	chr9:118157600-118159200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr9:118157600-118160600	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr9:118157800-118159000	Enhancers	HSMM	muscle
18	chr9:118157800-118159200	Enhancers	Fetal Muscle Leg	muscle
19	chr9:118157800-118159200	Enhancers	NH-A	brain
20	chr9:118158000-118159200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr9:118158000-118159200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr9:118158000-118160600	Enhancers	ES-WA7 Cell Line	embryonic stem cell
23	chr9:118158400-118159000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr9:118158600-118159000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr9:118158600-118159000	Enhancers	Stomach Smooth Muscle	stomach
26	chr9:118158600-118159200	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr9:118158600-118159400	Enhancers	Fetal Heart	heart
28	chr9:118158600-118159600	Weak transcription	HUES64 Cell Line	embryonic stem cell
29	chr9:118158800-118159000	Enhancers	ES-I3 Cell Line	embryonic stem cell
30	chr9:118158800-118159000	Enhancers	Right Atrium	heart
31	chr9:118158800-118159200	Enhancers	Fetal Intestine Large	intestine
32	chr9:118158800-118162600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
33	chr9:118158800-118163200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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