Variant report

Variant	rs7996879
Chromosome Location	chr13:93278904-93278905
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11840690	1.00[EUR][1000 genomes]
rs1333672	0.95[LWK][hapmap];0.96[YRI][hapmap]
rs1413190	1.00[YRI][hapmap]
rs6492620	1.00[EUR][1000 genomes]
rs6492624	0.82[LWK][hapmap];0.92[YRI][hapmap]
rs7317739	1.00[EUR][1000 genomes]
rs7997647	0.82[LWK][hapmap];1.00[YRI][hapmap]
rs8001877	0.89[YRI][hapmap]
rs9589595	1.00[EUR][1000 genomes]
rs9589599	1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs9589600	1.00[EUR][1000 genomes]
rs9589605	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456070	chr13:93208593-93298523	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv562730	chr13:93208593-93298523	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv1124	chr13:93242968-93289282	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1045395	chr13:93248456-93323269	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links