Variant report

Variant	rs79971467
Chromosome Location	chr1:56829253-56829254
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932	chr1:56816732-56842261	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	esv3509488	chr1:56829121-56835877	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:56825400-56829600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr1:56825400-56839000	Weak transcription	Psoas Muscle	Psoas
3	chr1:56827800-56829600	Enhancers	Skeletal Muscle Female	skeletal muscle
4	chr1:56827800-56830000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:56827800-56830000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr1:56828000-56829600	Enhancers	Brain Cingulate Gyrus	brain
7	chr1:56828000-56829800	Enhancers	Brain Hippocampus Middle	brain
8	chr1:56828200-56829600	Enhancers	Cortex derived primary cultured neurospheres	brain
9	chr1:56828600-56829600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr1:56828600-56829800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr1:56828600-56829800	Enhancers	Brain Anterior Caudate	brain
12	chr1:56828600-56829800	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr1:56828800-56829400	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr1:56828800-56829600	Enhancers	Brain Substantia Nigra	brain
15	chr1:56828800-56829800	Enhancers	HepG2	liver
16	chr1:56829000-56829400	Enhancers	HUES64 Cell Line	embryonic stem cell
17	chr1:56829000-56829400	Enhancers	Left Ventricle	heart
18	chr1:56829000-56829800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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