Variant report

Variant	rs7997258
Chromosome Location	chr13:29735770-29735771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11147364	0.81[GIH][hapmap];0.85[JPT][hapmap]
rs11618923	0.81[GIH][hapmap];0.85[JPT][hapmap];0.80[MEX][hapmap]
rs3930809	0.82[CHD][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4495979	0.85[JPT][hapmap]
rs4559776	0.92[CEU][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6490360	0.81[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap]
rs7330035	0.81[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap];0.80[AMR][1000 genomes]
rs9506114	0.85[JPT][hapmap]
rs9506118	0.80[AMR][1000 genomes]
rs9506119	0.80[AMR][1000 genomes]
rs9508299	0.81[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap]
rs9508300	0.81[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap]
rs9508302	0.81[GIH][hapmap];0.85[JPT][hapmap];0.84[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899957	chr13:29720732-29820422	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv455851	chr13:29728058-29746494	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv561391	chr13:29728058-29746494	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29734200-29736400	Enhancers	Dnd41	blood
2	chr13:29734400-29752600	Weak transcription	Aorta	Aorta
3	chr13:29735400-29739200	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr13:29735600-29735800	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links