Variant report

Variant	rs799928
Chromosome Location	chr7:80096089-80096090
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2906197	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2944399	1.00[AMR][1000 genomes]
rs799934	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs799935	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs813349	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv429785	chr7:79589749-80177049	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv831042	chr7:79984079-80122312	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1030961	chr7:80032525-80197468	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv538991	chr7:80032525-80197468	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv949205	chr7:80039695-80211200	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv888523	chr7:80088592-80142217	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:80092800-80097400	Enhancers	Fetal Intestine Small	intestine
2	chr7:80094600-80096400	Enhancers	Hela-S3	cervix
3	chr7:80094600-80098400	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr7:80095000-80096200	Enhancers	A549	lung
5	chr7:80095000-80096600	Weak transcription	Small Intestine	intestine
6	chr7:80095400-80097000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr7:80095400-80097200	Enhancers	Fetal Heart	heart
8	chr7:80095400-80097200	Enhancers	Fetal Intestine Large	intestine
9	chr7:80095600-80097200	Enhancers	Duodenum Mucosa	Duodenum
10	chr7:80095600-80097800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr7:80095600-80106800	Weak transcription	Right Atrium	heart
12	chr7:80096000-80096200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr7:80096000-80096200	Enhancers	Adipose Nuclei	Adipose
14	chr7:80096000-80096600	Enhancers	NHLF	lung
15	chr7:80096000-80096800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr7:80096000-80096800	Enhancers	Fetal Lung	lung
17	chr7:80096000-80096800	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr7:80096000-80097000	Enhancers	Muscle Satellite Cultured Cells	--
19	chr7:80096000-80097000	Enhancers	Osteobl	bone
20	chr7:80096000-80097200	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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