Variant report

Variant	rs800046
Chromosome Location	chr3:144355882-144355883
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1007565	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1178898	0.81[ASN][1000 genomes]
rs1178902	0.81[ASN][1000 genomes]
rs1880902	0.81[ASN][1000 genomes]
rs1918270	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2575182	0.81[ASN][1000 genomes]
rs2575187	0.81[ASN][1000 genomes]
rs2575193	0.81[ASN][1000 genomes]
rs2694958	0.81[ASN][1000 genomes]
rs2717378	0.81[ASN][1000 genomes]
rs759968	0.81[ASN][1000 genomes]
rs9857731	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532633	chr3:143802417-144440646	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591928	chr3:144050897-144822081	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3379740	chr3:144225847-144433818	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv2757895	chr3:144236202-144391387	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv2759185	chr3:144236202-144391387	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:144355000-144356400	Enhancers	Fetal Heart	heart
2	chr3:144355600-144356000	Enhancers	Brain Hippocampus Middle	brain
3	chr3:144355600-144356000	Enhancers	Right Atrium	heart
4	chr3:144355800-144356000	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr3:144355800-144356000	Enhancers	Brain Inferior Temporal Lobe	brain
6	chr3:144355800-144356000	Enhancers	Pancreas	Pancrea

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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