Variant report

Variant	rs80006098
Chromosome Location	chr3:134239602-134239603
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:134230977..134232793-chr3:134238434..134239989,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877510	chr3:134126150-134400448	Bivalent Enhancer Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv877511	chr3:134174071-134358947	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
3	nsv877512	chr3:134174071-134372486	Enhancers Strong transcription ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
4	nsv877513	chr3:134174071-134379752	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv877514	chr3:134191938-134372486	ZNF genes & repeats Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv829730	chr3:134199097-134359544	Genic enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
7	nsv1002382	chr3:134239191-134358001	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:134206400-134241200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr3:134206600-134251600	Weak transcription	Colonic Mucosa	Colon
3	chr3:134207000-134241600	Weak transcription	Psoas Muscle	Psoas
4	chr3:134213800-134246000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr3:134215800-134242200	Weak transcription	NHEK	skin
6	chr3:134222000-134245800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr3:134223600-134240800	Weak transcription	Colon Smooth Muscle	Colon
8	chr3:134224800-134241200	Weak transcription	Brain Germinal Matrix	brain
9	chr3:134224800-134245800	Weak transcription	Pancreas	Pancrea
10	chr3:134225000-134255800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:134225200-134241200	Weak transcription	Fetal Kidney	kidney
12	chr3:134225200-134256200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr3:134226400-134241400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:134230200-134241200	Weak transcription	Duodenum Mucosa	Duodenum
15	chr3:134230400-134240800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr3:134230800-134242000	Weak transcription	Left Ventricle	heart
17	chr3:134230800-134251800	Weak transcription	Aorta	Aorta
18	chr3:134230800-134256000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr3:134231200-134240800	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr3:134231200-134240800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:134231200-134241400	Weak transcription	Ovary	ovary
22	chr3:134231200-134242200	Weak transcription	Thymus	Thymus
23	chr3:134231200-134255800	Weak transcription	Placenta	Placenta
24	chr3:134231400-134240800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:134231600-134242200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
26	chr3:134232600-134246000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:134232800-134241400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:134234600-134241000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:134234600-134241000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr3:134235400-134241400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
31	chr3:134236200-134256400	Weak transcription	A549	lung
32	chr3:134236200-134267000	Weak transcription	HSMM	muscle
33	chr3:134236800-134241400	Weak transcription	Adipose Nuclei	Adipose
34	chr3:134237000-134256000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr3:134237000-134256200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr3:134237200-134246800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:134237400-134240000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr3:134237400-134240200	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr3:134238000-134242400	ZNF genes & repeats	Primary hematopoietic stem cells	blood
40	chr3:134238400-134242200	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr3:134238400-134245200	Weak transcription	Fetal Thymus	thymus
42	chr3:134238600-134239800	ZNF genes & repeats	Dnd41	blood
43	chr3:134238600-134240600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr3:134239000-134239800	Strong transcription	Monocytes-CD14+_RO01746	blood
45	chr3:134239000-134241600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr3:134239200-134239800	Weak transcription	Brain Hippocampus Middle	brain
47	chr3:134239200-134241000	Weak transcription	Primary B cells from cord blood	blood
48	chr3:134239200-134241000	Weak transcription	Fetal Lung	lung
49	chr3:134239200-134241400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
50	chr3:134239600-134240800	Weak transcription	Primary B cells from peripheral blood	blood

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