Variant report

Variant	rs8001709
Chromosome Location	chr13:38151621-38151622
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1006416	1.00[CHB][hapmap];0.86[AFR][1000 genomes]
rs1028728	1.00[CHB][hapmap]
rs11147662	1.00[CHB][hapmap]
rs11619443	1.00[CHB][hapmap]
rs11843893	1.00[CHB][hapmap]
rs17197908	1.00[CHB][hapmap]
rs4272902	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4432141	1.00[CHB][hapmap]
rs4522295	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56109211	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58734449	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9532080	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9547958	1.00[CHB][hapmap]
rs9547964	1.00[CHB][hapmap];0.92[AFR][1000 genomes]
rs9547965	1.00[CHB][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs9547991	1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948975	chr13:37281203-38280430	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1038850	chr13:37820489-38209571	Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv34109	chr13:37843819-38276391	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	nsv1045716	chr13:37952062-38394595	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
5	nsv832583	chr13:38030752-38202000	Enhancers Weak transcription Genic enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv818956	chr13:38131993-38153351	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38133400-38154800	Weak transcription	Fetal Stomach	stomach
2	chr13:38134000-38153800	Weak transcription	Fetal Muscle Trunk	muscle
3	chr13:38135200-38168800	Strong transcription	Osteobl	bone
4	chr13:38135600-38165400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr13:38139000-38171000	Weak transcription	Fetal Kidney	kidney
6	chr13:38139400-38153200	Weak transcription	NHLF	lung
7	chr13:38142200-38160200	Weak transcription	Left Ventricle	heart
8	chr13:38143400-38166000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr13:38144600-38155400	Weak transcription	NHDF-Ad	bronchial
10	chr13:38146200-38161200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr13:38146600-38162000	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr13:38148000-38167000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr13:38148400-38161200	Strong transcription	Fetal Lung	lung
14	chr13:38149200-38160800	Strong transcription	Placenta	Placenta
15	chr13:38150000-38152600	Strong transcription	NH-A	brain
16	chr13:38150000-38171000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr13:38150200-38154600	Weak transcription	Fetal Muscle Leg	muscle
18	chr13:38150200-38171400	Weak transcription	Colon Smooth Muscle	Colon
19	chr13:38151200-38162200	Strong transcription	Muscle Satellite Cultured Cells	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links