Variant report

Variant	rs8001805
Chromosome Location	chr13:30009157-30009158
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:30007620..30009722-chr13:30028117..30030313,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17073329	1.00[AMR][1000 genomes]
rs17073332	1.00[AMR][1000 genomes]
rs9551681	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30004000-30009800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr13:30004000-30015800	Weak transcription	Fetal Brain Male	brain
3	chr13:30006600-30011800	Enhancers	Fetal Stomach	stomach
4	chr13:30007800-30013200	Enhancers	Fetal Muscle Leg	muscle
5	chr13:30008200-30010000	Enhancers	Primary B cells from peripheral blood	blood
6	chr13:30008200-30010600	Enhancers	Placenta Amnion	Placenta Amnion
7	chr13:30008200-30011400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr13:30008400-30009400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr13:30008400-30009400	Enhancers	Psoas Muscle	Psoas
10	chr13:30008400-30010600	Flanking Active TSS	Hela-S3	cervix
11	chr13:30008400-30011000	Enhancers	Duodenum Smooth Muscle	Duodenum
12	chr13:30008400-30011200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr13:30008400-30011400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr13:30008400-30011400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr13:30008400-30012400	Flanking Active TSS	Fetal Heart	heart
16	chr13:30008600-30009200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr13:30008600-30009600	Enhancers	NH-A	brain
18	chr13:30008600-30010200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr13:30008600-30010600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr13:30008600-30010600	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr13:30008600-30010600	Flanking Active TSS	Stomach Smooth Muscle	stomach
22	chr13:30008600-30013200	Enhancers	Ovary	ovary
23	chr13:30008600-30014800	Enhancers	Fetal Lung	lung
24	chr13:30008800-30009200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
25	chr13:30008800-30009200	Flanking Active TSS	HSMMtube	muscle
26	chr13:30008800-30009400	Enhancers	Right Atrium	heart
27	chr13:30008800-30009400	Enhancers	Right Ventricle	heart
28	chr13:30008800-30009400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr13:30008800-30009400	Flanking Active TSS	NHDF-Ad	bronchial
30	chr13:30008800-30009800	Enhancers	K562	blood
31	chr13:30008800-30010000	Flanking Active TSS	HSMM	muscle
32	chr13:30008800-30011200	Flanking Active TSS	Muscle Satellite Cultured Cells	--
33	chr13:30008800-30011600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr13:30008800-30011600	Enhancers	NHLF	lung
35	chr13:30009000-30009400	Weak transcription	Fetal Kidney	kidney
36	chr13:30009000-30009400	Active TSS	Rectal Smooth Muscle	rectum
37	chr13:30009000-30009800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr13:30009000-30009800	Weak transcription	Aorta	Aorta
39	chr13:30009000-30010000	Weak transcription	Left Ventricle	heart
40	chr13:30009000-30010600	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr13:30009000-30010600	Flanking Active TSS	Osteobl	bone
42	chr13:30009000-30011000	Enhancers	Colon Smooth Muscle	Colon
43	chr13:30009000-30011200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr13:30009000-30011200	Enhancers	NHEK	skin
45	chr13:30009000-30011400	Enhancers	Fetal Adrenal Gland	Adrenal Gland

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