Variant report

Variant	rs80065855
Chromosome Location	chr6:33540340-33540341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:1)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:33532988..33536659-chr6:33537187..33540995,4	K562	blood:
2	chr6:33356979..33359554-chr6:33539289..33540812,2	K562	blood:
3	chr6:33375962..33378534-chr6:33537596..33540481,2	K562	blood:
4	chr6:33392929..33396981-chr6:33537285..33540754,6	MCF-7	breast:
5	chr6:33379174..33381010-chr6:33538458..33541414,2	K562	blood:
6	chr6:33392424..33395335-chr6:33538728..33540669,5	K562	blood:
7	chr6:33357812..33359554-chr6:33539312..33540834,2	K562	blood:
8	chr6:33537234..33540947-chr6:33547325..33549534,4	K562	blood:
9	chr6:33538816..33540942-chr6:33543611..33545834,3	MCF-7	breast:

No data

(count:1 , 50 per page) page: 1

No.	miRNA target gene	miRNA name	Chromosome Location	mirBase accession
1	BAK1	hsa-miR-92a-3p	chr6:33540335-33540360

Variant related genes	Relation type
ENSG00000225644	Chromatin interaction
ENSG00000030110	Chromatin interaction
ENSG00000112511	Chromatin interaction
ENSG00000237649	Chromatin interaction
BAK1	miRNA target site

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv462896	chr6:33534880-33588147	Bivalent Enhancer Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	nsv602833	chr6:33534880-33588147	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv519079	chr6:33540209-33542538	Weak transcription Strong transcription Genic enhancers Enhancers	Chromatin interactive region miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:33539200-33541600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:33539200-33547200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr6:33539400-33541400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:33539400-33541600	Weak transcription	Ovary	ovary
5	chr6:33539400-33541800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:33539600-33540400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr6:33539600-33540400	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:33539600-33540400	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:33539600-33540400	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:33539600-33540400	Genic enhancers	Placenta	Placenta
11	chr6:33539600-33540400	Strong transcription	NHLF	lung
12	chr6:33539600-33541600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:33539600-33541600	Weak transcription	HUES48 Cell Line	embryonic stem cell
14	chr6:33539600-33541600	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr6:33539600-33541800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr6:33539600-33541800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr6:33539600-33541800	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:33539600-33541800	Weak transcription	Small Intestine	intestine
19	chr6:33539600-33542000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr6:33539600-33542000	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr6:33539600-33542000	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:33539600-33542000	Weak transcription	HUVEC	blood vessel
23	chr6:33539600-33542800	Weak transcription	A549	lung
24	chr6:33539600-33546200	Weak transcription	NHDF-Ad	bronchial
25	chr6:33539600-33546400	Weak transcription	Fetal Brain Male	brain
26	chr6:33539600-33547000	Weak transcription	Fetal Kidney	kidney
27	chr6:33539800-33540400	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr6:33539800-33540400	Enhancers	Primary B cells from peripheral blood	blood
29	chr6:33539800-33540400	Enhancers	Primary T helper naive cells from peripheral blood	blood
30	chr6:33539800-33540400	Genic enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr6:33539800-33540400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr6:33539800-33540400	Enhancers	Brain Angular Gyrus	brain
33	chr6:33539800-33540400	Genic enhancers	Duodenum Mucosa	Duodenum
34	chr6:33539800-33540400	Genic enhancers	Fetal Thymus	thymus
35	chr6:33539800-33540400	Genic enhancers	Rectal Mucosa Donor 29	rectum
36	chr6:33539800-33540400	Enhancers	Thymus	Thymus
37	chr6:33539800-33540400	Strong transcription	HMEC	breast
38	chr6:33539800-33540400	Strong transcription	NHEK	skin
39	chr6:33539800-33540600	Genic enhancers	Primary T cells fromperipheralblood	blood
40	chr6:33539800-33540800	Weak transcription	Adipose Nuclei	Adipose
41	chr6:33539800-33541000	Weak transcription	Brain Germinal Matrix	brain
42	chr6:33539800-33541200	Weak transcription	Fetal Brain Female	brain
43	chr6:33539800-33541200	Weak transcription	Stomach Smooth Muscle	stomach
44	chr6:33539800-33541200	Weak transcription	Osteobl	bone
45	chr6:33539800-33541400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr6:33539800-33541400	Weak transcription	Aorta	Aorta
47	chr6:33539800-33541600	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr6:33539800-33541600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr6:33539800-33541600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr6:33539800-33541600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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