Variant report

Variant	rs800702
Chromosome Location	chr7:16012916-16012917
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs1072964	0.81[AMR][1000 genomes]
rs17169151	0.81[AMR][1000 genomes]
rs17169176	0.92[ASN][1000 genomes]
rs800697	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs800699	0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs800717	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv1016642	chr7:15884061-16799788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv949309	chr7:15986709-16236162	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv1024621	chr7:16009368-16030199	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:16011800-16013600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr7:16012000-16014400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr7:16012200-16013000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:16012200-16013200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:16012200-16013400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr7:16012200-16013800	Enhancers	HUVEC	blood vessel
7	chr7:16012400-16013000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:16012400-16013000	Enhancers	Primary hematopoietic stem cells	blood
9	chr7:16012400-16013000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:16012400-16013200	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr7:16012400-16013400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:16012600-16013000	Enhancers	Fetal Muscle Leg	muscle
13	chr7:16012600-16013000	Enhancers	Ovary	ovary
14	chr7:16012600-16013200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr7:16012600-16013200	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:16012600-16013200	Enhancers	Fetal Lung	lung
17	chr7:16012800-16013000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr7:16012800-16013000	Enhancers	Left Ventricle	heart
19	chr7:16012800-16013000	Enhancers	Right Atrium	heart
20	chr7:16012800-16013200	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
21	chr7:16012800-16013200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr7:16012800-16013200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr7:16012800-16013200	Enhancers	Spleen	Spleen
24	chr7:16012800-16013200	Enhancers	NHDF-Ad	bronchial
25	chr7:16012800-16013200	Enhancers	Osteobl	bone
26	chr7:16012800-16013600	Enhancers	Adipose Nuclei	Adipose

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