Variant report

Variant	rs8007156
Chromosome Location	chr14:31801138-31801139
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10143516	0.81[AMR][1000 genomes]
rs10149460	0.90[AMR][1000 genomes]
rs10467704	0.90[AMR][1000 genomes]
rs12100784	0.90[AMR][1000 genomes]
rs12100791	0.90[AMR][1000 genomes]
rs12589391	0.90[AMR][1000 genomes]
rs28758850	0.90[AMR][1000 genomes]
rs55719863	0.81[AMR][1000 genomes]
rs61107917	0.90[AMR][1000 genomes]
rs61408696	0.90[AMR][1000 genomes]
rs61416910	0.90[AMR][1000 genomes]
rs61741258	0.90[AMR][1000 genomes]
rs61744248	0.89[AMR][1000 genomes]
rs7142843	0.90[AMR][1000 genomes]
rs7158422	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs74043907	0.90[AMR][1000 genomes]
rs74043915	0.90[AMR][1000 genomes]
rs74043923	0.90[AMR][1000 genomes]
rs74043937	0.90[AMR][1000 genomes]
rs74043941	0.90[AMR][1000 genomes]
rs8003524	0.90[AMR][1000 genomes]
rs8003996	0.90[AMR][1000 genomes]
rs8012411	0.90[AMR][1000 genomes]
rs8014570	0.90[AMR][1000 genomes]
rs8020685	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2830427	chr14:31639110-32000034	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
2	nsv1050597	chr14:31711248-31904761	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv901589	chr14:31768231-31944723	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:31762800-31811800	Weak transcription	Fetal Heart	heart
2	chr14:31768000-31805800	Weak transcription	NHEK	skin
3	chr14:31770000-31812600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
4	chr14:31770400-31802800	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr14:31771000-31888800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:31772400-31825200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
7	chr14:31774600-31811200	Weak transcription	HUVEC	blood vessel
8	chr14:31782200-31813000	Weak transcription	Rectal Smooth Muscle	rectum
9	chr14:31782200-31814000	Weak transcription	Fetal Kidney	kidney
10	chr14:31782200-31875200	Weak transcription	Gastric	stomach
11	chr14:31782400-31827000	Weak transcription	Aorta	Aorta
12	chr14:31787200-31809200	Weak transcription	NHLF	lung
13	chr14:31789800-31805800	Weak transcription	Stomach Smooth Muscle	stomach
14	chr14:31789800-31806800	Weak transcription	Psoas Muscle	Psoas
15	chr14:31791200-31812600	Weak transcription	Colon Smooth Muscle	Colon
16	chr14:31791600-31801200	Weak transcription	Hela-S3	cervix
17	chr14:31791600-31806000	Weak transcription	NHDF-Ad	bronchial
18	chr14:31796800-31808800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr14:31797000-31809000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:31797600-31801800	Strong transcription	Rectal Mucosa Donor 29	rectum
21	chr14:31797800-31801200	ZNF genes & repeats	Fetal Intestine Small	intestine
22	chr14:31798000-31802000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
23	chr14:31798200-31801400	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
24	chr14:31798200-31807600	Strong transcription	Osteobl	bone
25	chr14:31798400-31804000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr14:31798600-31801200	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr14:31798600-31801200	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
28	chr14:31798600-31801200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
29	chr14:31798600-31801600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
30	chr14:31798600-31801800	ZNF genes & repeats	Primary neutrophils fromperipheralblood	blood
31	chr14:31798600-31801800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr14:31798600-31802000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
33	chr14:31798600-31803800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr14:31798600-31803800	Strong transcription	Fetal Lung	lung
35	chr14:31798800-31801200	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:31798800-31801200	ZNF genes & repeats	Fetal Muscle Leg	muscle
37	chr14:31798800-31801400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:31798800-31801800	Strong transcription	Left Ventricle	heart
39	chr14:31799200-31805200	Strong transcription	Muscle Satellite Cultured Cells	--
40	chr14:31799400-31801200	Strong transcription	Ovary	ovary
41	chr14:31799600-31801200	Weak transcription	Pancreas	Pancrea
42	chr14:31799600-31802800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr14:31799600-31806000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
44	chr14:31799600-31827000	Weak transcription	Right Ventricle	heart
45	chr14:31799800-31801800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr14:31799800-31802800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
47	chr14:31799800-31803000	Weak transcription	NH-A	brain
48	chr14:31799800-31803400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr14:31799800-31803600	Weak transcription	Brain Anterior Caudate	brain
50	chr14:31799800-31805400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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