Variant report

Variant	rs80076151
Chromosome Location	chr1:59198164-59198165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:59196730..59199311-chr1:59246080..59248881,2	K562	blood:
2	chr1:59194152..59196031-chr1:59196369..59198347,2	MCF-7	breast:

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754829	chr1:59197556-59215791	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Strong transcription	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:59192600-59204200	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr1:59193600-59200200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr1:59197200-59198800	Enhancers	Breast Myoepithelial Primary Cells	Breast
4	chr1:59197400-59198200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:59197400-59198400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr1:59197400-59198400	Enhancers	NHEK	skin
7	chr1:59197400-59198600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:59197400-59198600	Enhancers	Osteobl	bone
9	chr1:59197400-59198800	Enhancers	Rectal Smooth Muscle	rectum
10	chr1:59197600-59198200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr1:59197600-59198200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr1:59197600-59198200	Enhancers	HMEC	breast
13	chr1:59197600-59198400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr1:59197600-59198400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr1:59197600-59198400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr1:59197600-59198400	Enhancers	Aorta	Aorta
17	chr1:59197600-59198400	Enhancers	Colon Smooth Muscle	Colon
18	chr1:59197600-59198400	Enhancers	Gastric	stomach
19	chr1:59197600-59198400	Enhancers	Ovary	ovary
20	chr1:59197600-59198400	Enhancers	NHDF-Ad	bronchial
21	chr1:59197800-59198400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr1:59197800-59198800	Enhancers	Placenta Amnion	Placenta Amnion
23	chr1:59198000-59198400	Enhancers	Fetal Heart	heart
24	chr1:59198000-59200600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links