Variant report

Variant	rs80079339
Chromosome Location	chr1:79096616-79096617
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871835	chr1:78528803-79501129	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv830315	chr1:79008443-79200591	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
3	nsv871140	chr1:79095581-79155134	Strong transcription Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:79086800-79108800	Weak transcription	Primary hematopoietic stem cells	blood
2	chr1:79087200-79097400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr1:79088600-79110600	Weak transcription	Fetal Thymus	thymus
4	chr1:79089400-79098800	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:79089400-79107200	Weak transcription	Ovary	ovary
6	chr1:79089600-79098800	Weak transcription	Aorta	Aorta
7	chr1:79089800-79115000	Weak transcription	Small Intestine	intestine
8	chr1:79090800-79110000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
9	chr1:79090800-79110000	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr1:79093600-79097800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:79094000-79097600	Weak transcription	Left Ventricle	heart
12	chr1:79094400-79110600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr1:79094600-79110000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr1:79094600-79110200	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr1:79094600-79115200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr1:79095000-79107200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr1:79095800-79097600	Strong transcription	GM12878-XiMat	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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