Variant report

Variant	rs8008471
Chromosome Location	chr14:71172840-71172841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:71172650..71175244-chr14:71275526..71277496,2	MCF-7	breast:
2	chr14:71132827..71135159-chr14:71171125..71172879,2	MCF-7	breast:
3	chr14:71148463..71151197-chr14:71172492..71175402,2	MCF-7	breast:
4	chr14:71106871..71109388-chr14:71171457..71173747,2	MCF-7	breast:
5	chr14:71131310..71133408-chr14:71170654..71173445,2	MCF-7	breast:
6	chr14:71164951..71167237-chr14:71172812..71175429,3	MCF-7	breast:
7	chr14:71127446..71130650-chr14:71171405..71173659,3	MCF-7	breast:
8	chr14:71128620..71130428-chr14:71172460..71175177,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000006432	Chromatin interaction
ENSG00000259115	Chromatin interaction
ENSG00000259153	Chromatin interaction
ENSG00000133985	Chromatin interaction
ENSG00000245466	Chromatin interaction
ENSG00000258689	Chromatin interaction

rs_ID	r²[population]
rs17176699	1.00[ASN][1000 genomes]
rs17766230	1.00[ASN][1000 genomes]
rs7146435	1.00[ASN][1000 genomes]

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71133200-71173000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:71143000-71177800	Weak transcription	Primary B cells from cord blood	blood
3	chr14:71165400-71180000	Weak transcription	Aorta	Aorta
4	chr14:71165600-71173000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:71165600-71173600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr14:71167000-71173800	Weak transcription	Gastric	stomach
7	chr14:71168000-71173800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr14:71168400-71174000	Weak transcription	Lung	lung
9	chr14:71168400-71181000	Weak transcription	Left Ventricle	heart
10	chr14:71168800-71173000	Weak transcription	Esophagus	oesophagus
11	chr14:71168800-71173000	Weak transcription	Spleen	Spleen
12	chr14:71169800-71173800	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr14:71169800-71174000	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr14:71172200-71176600	Enhancers	HepG2	liver
15	chr14:71172400-71174600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
16	chr14:71172400-71174600	Enhancers	GM12878-XiMat	blood
17	chr14:71172400-71175800	Enhancers	iPS-20b Cell Line	embryonic stem cell
18	chr14:71172400-71177200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr14:71172600-71173200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr14:71172600-71173200	Enhancers	Fetal Heart	heart
21	chr14:71172600-71173400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr14:71172600-71174000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr14:71172600-71174600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:71172600-71174600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr14:71172600-71174600	Enhancers	HSMM	muscle
26	chr14:71172600-71174600	Enhancers	NHDF-Ad	bronchial
27	chr14:71172600-71177200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr14:71172600-71177200	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr14:71172600-71177200	Enhancers	iPS-15b Cell Line	embryonic stem cell
30	chr14:71172600-71177200	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr14:71172600-71177200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
32	chr14:71172800-71173000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:71172800-71173000	Enhancers	Muscle Satellite Cultured Cells	--
34	chr14:71172800-71173000	Enhancers	Placenta	Placenta
35	chr14:71172800-71173000	Enhancers	Pancreas	Pancrea
36	chr14:71172800-71173000	Active TSS	NHLF	lung
37	chr14:71172800-71173400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:71172800-71174600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr14:71172800-71174600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr14:71172800-71174600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
41	chr14:71172800-71174600	Enhancers	NHEK	skin
42	chr14:71172800-71174600	Enhancers	Osteobl	bone
43	chr14:71172800-71175800	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr14:71172800-71177200	Enhancers	H9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links