Variant report

Variant	rs8008663
Chromosome Location	chr14:55826358-55826359
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:55820434..55823262-chr14:55823747..55828312,4	K562	blood:
2	chr14:55823892..55826628-chr14:55877338..55879370,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126775	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs34473419	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35930696	1.00[AFR][1000 genomes]
rs61976625	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039438	chr14:55746585-55886099	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv901957	chr14:55819219-55853724	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv901958	chr14:55822095-56045411	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:55801200-55842800	Weak transcription	Fetal Brain Male	brain
2	chr14:55808800-55865200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:55813600-55837200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:55814000-55830400	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:55814400-55853200	Weak transcription	Right Atrium	heart
6	chr14:55816000-55837200	Weak transcription	K562	blood
7	chr14:55817200-55826400	Strong transcription	Fetal Stomach	stomach
8	chr14:55818000-55841800	Weak transcription	Hela-S3	cervix
9	chr14:55818200-55842800	Weak transcription	Brain Angular Gyrus	brain
10	chr14:55818200-55877600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr14:55818400-55832400	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr14:55818400-55858800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:55818800-55842600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr14:55819000-55835200	Weak transcription	NH-A	brain
15	chr14:55819200-55831600	Weak transcription	Aorta	Aorta
16	chr14:55819200-55832400	Weak transcription	HUVEC	blood vessel
17	chr14:55819200-55835400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr14:55819200-55836400	Weak transcription	Ovary	ovary
19	chr14:55819200-55842800	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:55819400-55832200	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:55819400-55832200	Weak transcription	Pancreas	Pancrea
22	chr14:55819400-55833400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr14:55819400-55847800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:55819400-55850600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr14:55819400-55855200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr14:55819600-55831800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr14:55819600-55832000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr14:55819600-55832200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr14:55819600-55832200	Weak transcription	Fetal Kidney	kidney
30	chr14:55819600-55832200	Weak transcription	Lung	lung
31	chr14:55819600-55832400	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr14:55819600-55835400	Weak transcription	H1 Cell Line	embryonic stem cell
33	chr14:55819600-55836000	Weak transcription	Gastric	stomach
34	chr14:55819800-55831400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr14:55819800-55832200	Weak transcription	Primary B cells from cord blood	blood
36	chr14:55819800-55834600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr14:55819800-55835000	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr14:55819800-55835000	Weak transcription	Duodenum Smooth Muscle	Duodenum
39	chr14:55819800-55842200	Weak transcription	HSMM	muscle
40	chr14:55820000-55831800	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr14:55820000-55831800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
42	chr14:55820000-55832400	Weak transcription	Liver	Liver
43	chr14:55820000-55834600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr14:55821000-55832000	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr14:55821000-55832400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr14:55821200-55826800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr14:55821200-55842800	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr14:55821400-55832200	Weak transcription	Psoas Muscle	Psoas
49	chr14:55821400-55834000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr14:55821400-55835800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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