Variant report

Variant	rs8008802
Chromosome Location	chr14:71207878-71207879
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10129495	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10131177	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10131364	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10141804	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10143748	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11621281	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11624934	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11628333	0.98[ASN][1000 genomes]
rs12886990	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12888427	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12897648	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17108492	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1987652	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2158530	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2158531	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs28420983	0.80[AFR][1000 genomes];0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4902843	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4902846	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4902849	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs66736782	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71425216	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8019261	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8019448	0.86[ASN][1000 genomes]
rs8020663	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8022333	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs8022401	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9323548	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039460	chr14:71176898-71371125	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv1041980	chr14:71196358-71767339	Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv542125	chr14:71196358-71767339	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:71185800-71219200	Weak transcription	Stomach Mucosa	stomach
2	chr14:71186000-71221600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:71186000-71221600	Weak transcription	Hela-S3	cervix
4	chr14:71189800-71209400	Strong transcription	Fetal Brain Female	brain
5	chr14:71190000-71214400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:71191400-71220000	Weak transcription	Fetal Brain Male	brain
7	chr14:71191600-71220200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr14:71192400-71220200	Weak transcription	Fetal Kidney	kidney
9	chr14:71192600-71221800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr14:71193400-71211400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr14:71193600-71210200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr14:71193800-71209400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr14:71193800-71209400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
14	chr14:71194000-71208400	Weak transcription	Brain Substantia Nigra	brain
15	chr14:71194000-71222000	Weak transcription	HSMMtube	muscle
16	chr14:71194200-71209600	Strong transcription	HUES64 Cell Line	embryonic stem cell
17	chr14:71194400-71210400	Strong transcription	HUES6 Cell Line	embryonic stem cell
18	chr14:71194400-71213400	Weak transcription	Psoas Muscle	Psoas
19	chr14:71194400-71221600	Weak transcription	Left Ventricle	heart
20	chr14:71194600-71218600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr14:71194600-71221600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr14:71195600-71209400	Strong transcription	Placenta	Placenta
23	chr14:71195600-71209600	Strong transcription	H9 Cell Line	embryonic stem cell
24	chr14:71195600-71210000	Strong transcription	H1 Cell Line	embryonic stem cell
25	chr14:71196200-71209200	Strong transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:71196200-71217000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
27	chr14:71196400-71209400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
28	chr14:71197000-71228800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr14:71197600-71217000	Weak transcription	Duodenum Smooth Muscle	Duodenum
30	chr14:71198400-71209400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr14:71198400-71223400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr14:71198800-71210000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:71199000-71212400	Weak transcription	Brain Cingulate Gyrus	brain
34	chr14:71199400-71209000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr14:71199600-71209400	Strong transcription	HMEC	breast
36	chr14:71199600-71219600	Weak transcription	Pancreatic Islets	Pancreatic Islet
37	chr14:71200000-71210200	Strong transcription	NHEK	skin
38	chr14:71200200-71208800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr14:71200200-71216400	Weak transcription	Brain Hippocampus Middle	brain
40	chr14:71200400-71215400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
41	chr14:71200600-71208600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr14:71200600-71224200	Weak transcription	Spleen	Spleen
43	chr14:71200800-71213000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr14:71201200-71215200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr14:71201200-71228000	Weak transcription	Colonic Mucosa	Colon
46	chr14:71201600-71219000	Weak transcription	Lung	lung
47	chr14:71201600-71220600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
48	chr14:71202000-71208400	Weak transcription	Fetal Intestine Small	intestine
49	chr14:71202600-71210000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr14:71203800-71209000	Strong transcription	Liver	Liver

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