Variant report

Variant	rs8009385
Chromosome Location	chr14:35148311-35148312
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35146210..35148621-chr14:35155232..35157199,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs4624076	0.87[ASN][1000 genomes]
rs57991509	0.96[ASN][1000 genomes]
rs6571673	0.91[ASN][1000 genomes]
rs6571674	0.92[ASN][1000 genomes]
rs7146330	0.97[ASN][1000 genomes]
rs7148135	0.93[ASN][1000 genomes]
rs8004693	0.84[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs8007333	0.93[ASN][1000 genomes]
rs8007936	0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8015484	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1038360	chr14:35040853-35152886	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1041857	chr14:35084889-35417180	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
6	nsv564195	chr14:35107957-35153991	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
7	nsv1038792	chr14:35108080-35160860	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1053843	chr14:35110120-35167640	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
9	nsv542028	chr14:35110120-35167640	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1049026	chr14:35110285-35160860	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	nsv564196	chr14:35110512-35152084	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
12	nsv564198	chr14:35118196-35152084	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
13	nsv542029	chr14:35118620-35152886	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
14	nsv564199	chr14:35135186-35167362	Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35146400-35152000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:35146400-35152000	Weak transcription	Brain Angular Gyrus	brain
3	chr14:35146600-35149600	Weak transcription	Liver	Liver
4	chr14:35146600-35152200	Weak transcription	Psoas Muscle	Psoas
5	chr14:35147000-35150000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr14:35147600-35150000	Weak transcription	HepG2	liver
7	chr14:35147600-35152200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr14:35147800-35152000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr14:35147800-35152200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr14:35147800-35152200	Weak transcription	K562	blood
11	chr14:35148000-35148800	Enhancers	Brain Inferior Temporal Lobe	brain
12	chr14:35148000-35148800	Enhancers	Brain Substantia Nigra	brain
13	chr14:35148000-35149800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:35148000-35150000	Weak transcription	Brain Anterior Caudate	brain
15	chr14:35148000-35151800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr14:35148000-35152000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr14:35148000-35152200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:35148000-35153800	Weak transcription	NHLF	lung
19	chr14:35148000-35155000	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr14:35148000-35155200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
21	chr14:35148000-35161600	Weak transcription	A549	lung
22	chr14:35148200-35148400	Enhancers	Brain Cingulate Gyrus	brain
23	chr14:35148200-35149800	Weak transcription	Fetal Muscle Leg	muscle
24	chr14:35148200-35150000	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:35148200-35150000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:35148200-35150000	Weak transcription	Skeletal Muscle Female	skeletal muscle
27	chr14:35148200-35151600	Weak transcription	HSMMtube	muscle
28	chr14:35148200-35152000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:35148200-35152000	Weak transcription	HSMM	muscle
30	chr14:35148200-35152000	Weak transcription	Osteobl	bone
31	chr14:35148200-35152200	Weak transcription	NH-A	brain
32	chr14:35148200-35152200	Weak transcription	NHDF-Ad	bronchial
33	chr14:35148200-35154000	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links