Variant report

Variant	rs8009847
Chromosome Location	chr14:104380338-104380339
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:104380212..104384984-chr14:104386073..104389493,7	MCF-7	breast:
2	chr14:104268895..104271672-chr14:104378681..104380449,2	MCF-7	breast:
3	chr14:104379142..104381534-chr14:104393675..104395664,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TDRD9-AS1-2	chr14:104380298-104380479	NONHSAT040230

Variant related genes	Relation type
ENSG00000156414	Chromatin interaction
ENSG00000156411	Chromatin interaction

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10129730	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10137889	0.81[AMR][1000 genomes]
rs10139210	0.81[AMR][1000 genomes]
rs10140292	0.84[AMR][1000 genomes]
rs10140390	0.84[AMR][1000 genomes]
rs10142365	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10145882	0.84[AMR][1000 genomes]
rs10149898	0.81[AMR][1000 genomes]
rs12431625	0.84[AMR][1000 genomes]
rs12437404	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs17101922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28407129	1.00[ASN][1000 genomes]
rs28493894	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28563863	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28720127	0.80[AMR][1000 genomes]
rs34606901	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4900603	1.00[ASN][1000 genomes]
rs4906384	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4906386	0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs4906388	0.81[AMR][1000 genomes]
rs55920546	0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs56817754	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs58071582	1.00[ASN][1000 genomes]
rs58701300	0.88[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs59838226	0.81[AMR][1000 genomes]
rs60242182	0.95[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs74086761	0.86[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs74086762	1.00[ASN][1000 genomes]
rs74086783	0.81[AMR][1000 genomes]
rs8020110	0.88[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs8022769	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045162	chr14:104140525-104594841	Flanking Active TSS Strong transcription Bivalent Enhancer Enhancers Active TSS Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv542204	chr14:104140525-104594841	Active TSS Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	esv2758368	chr14:104147525-104412813	Active TSS Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
4	esv2760013	chr14:104147525-104412813	Enhancers Genic enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv902318	chr14:104255083-104464809	Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
6	nsv902319	chr14:104255083-104620077	Weak transcription Enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	64 gene(s)	inside rSNPs	diseases
7	nsv1042792	chr14:104326137-104384260	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
8	nsv542207	chr14:104326137-104384260	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
9	nsv1048353	chr14:104361402-104483286	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv902322	chr14:104365310-104464809	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:104363200-104387000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:104375000-104385800	Weak transcription	Small Intestine	intestine
3	chr14:104375800-104384200	Strong transcription	Dnd41	blood
4	chr14:104376000-104384800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr14:104376600-104384200	Weak transcription	Right Atrium	heart
6	chr14:104376800-104382200	Weak transcription	Pancreas	Pancrea
7	chr14:104376800-104386200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr14:104376800-104387000	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr14:104376800-104387000	Weak transcription	Stomach Mucosa	stomach
10	chr14:104377200-104380400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:104377200-104384800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr14:104377200-104385600	Strong transcription	Fetal Intestine Small	intestine
13	chr14:104377200-104386400	Weak transcription	Fetal Heart	heart
14	chr14:104377200-104386800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr14:104377400-104380400	Strong transcription	Brain Hippocampus Middle	brain
16	chr14:104377400-104380600	Strong transcription	Brain Inferior Temporal Lobe	brain
17	chr14:104377400-104380800	Strong transcription	Primary T cells from cord blood	blood
18	chr14:104377400-104381000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr14:104377400-104381000	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr14:104377400-104381000	Strong transcription	Right Ventricle	heart
21	chr14:104377400-104381200	Strong transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:104377400-104381400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:104377400-104381600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr14:104377400-104381800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
25	chr14:104377400-104383000	Strong transcription	Adipose Nuclei	Adipose
26	chr14:104377400-104383200	Strong transcription	Primary T helper cells fromperipheralblood	blood
27	chr14:104377400-104383200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr14:104377400-104383800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
29	chr14:104377400-104384400	Strong transcription	Placenta	Placenta
30	chr14:104377400-104384600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr14:104377400-104384600	Strong transcription	Primary B cells from peripheral blood	blood
32	chr14:104377400-104384600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr14:104377400-104384600	Strong transcription	Liver	Liver
34	chr14:104377400-104384600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
35	chr14:104377400-104384600	Strong transcription	Fetal Intestine Large	intestine
36	chr14:104377400-104384600	Strong transcription	Fetal Muscle Trunk	muscle
37	chr14:104377400-104384600	Strong transcription	Sigmoid Colon	Sigmoid Colon
38	chr14:104377400-104384800	Strong transcription	Primary neutrophils fromperipheralblood	blood
39	chr14:104377400-104384800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr14:104377400-104384800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr14:104377400-104384800	Strong transcription	Duodenum Mucosa	Duodenum
42	chr14:104377400-104384800	Strong transcription	Thymus	Thymus
43	chr14:104377400-104385200	Strong transcription	Fetal Brain Female	brain
44	chr14:104377400-104385200	Strong transcription	Fetal Muscle Leg	muscle
45	chr14:104377400-104386000	Strong transcription	Fetal Stomach	stomach
46	chr14:104377600-104380400	Strong transcription	Psoas Muscle	Psoas
47	chr14:104377600-104380600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr14:104377600-104380600	Strong transcription	HSMMtube	muscle
49	chr14:104377600-104380800	Strong transcription	HMEC	breast
50	chr14:104377600-104381200	Strong transcription	Primary B cells from cord blood	blood

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