Variant report

Variant	rs8011
Chromosome Location	chr8:20079042-20079043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:20078974..20080125-chr8:20233790..20234379,3	MCF-7	breast:
2	chr8:19698148..19700086-chr8:20077801..20079801,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11987478	1.00[AMR][1000 genomes]
rs11988535	1.00[AMR][1000 genomes]
rs11990886	1.00[AMR][1000 genomes]
rs6998966	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1033511	chr8:19751299-20625091	Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Weak transcription Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv530877	chr8:19873053-20593254	Genic enhancers Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv1015598	chr8:19963102-20088510	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
4	nsv539523	chr8:19963102-20088510	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
5	nsv6107	chr8:20056154-20100794	Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:20056400-20089600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr8:20061400-20081200	Strong transcription	Primary B cells from cord blood	blood
3	chr8:20061600-20085200	Strong transcription	HUES48 Cell Line	embryonic stem cell
4	chr8:20061600-20086400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr8:20061800-20079400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr8:20061800-20087400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr8:20062000-20079600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr8:20062000-20085000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr8:20062200-20084400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
10	chr8:20062400-20079200	Strong transcription	NH-A	brain
11	chr8:20062600-20079800	Strong transcription	Duodenum Mucosa	Duodenum
12	chr8:20063000-20087200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr8:20063200-20079400	Strong transcription	Primary T helper cells PMA-I stimulated	--
14	chr8:20063200-20086600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr8:20063600-20080000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr8:20063800-20079400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr8:20065400-20081200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr8:20065400-20081400	Strong transcription	Primary T cells from cord blood	blood
19	chr8:20065400-20081400	Strong transcription	NHEK	skin
20	chr8:20065600-20079200	Strong transcription	Left Ventricle	heart
21	chr8:20065600-20086400	Strong transcription	Fetal Muscle Trunk	muscle
22	chr8:20065800-20079400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr8:20065800-20079400	Strong transcription	Brain Anterior Caudate	brain
24	chr8:20065800-20080400	Strong transcription	Rectal Mucosa Donor 29	rectum
25	chr8:20065800-20086000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:20066200-20079400	Strong transcription	Esophagus	oesophagus
27	chr8:20066200-20081400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
28	chr8:20066400-20079400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:20066400-20079400	Strong transcription	Duodenum Smooth Muscle	Duodenum
30	chr8:20066400-20079800	Strong transcription	H1 Cell Line	embryonic stem cell
31	chr8:20066400-20079800	Strong transcription	Primary hematopoietic stem cells	blood
32	chr8:20066400-20080000	Strong transcription	Thymus	Thymus
33	chr8:20066400-20080000	Strong transcription	K562	blood
34	chr8:20066400-20080200	Strong transcription	Placenta	Placenta
35	chr8:20066400-20080400	Strong transcription	Fetal Thymus	thymus
36	chr8:20066400-20080800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr8:20066400-20081200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr8:20066400-20081400	Strong transcription	Primary T cells fromperipheralblood	blood
39	chr8:20066400-20081400	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr8:20066400-20084200	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr8:20066600-20079200	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr8:20066600-20079200	Strong transcription	Stomach Smooth Muscle	stomach
43	chr8:20066600-20079200	Strong transcription	HUVEC	blood vessel
44	chr8:20066600-20079600	Strong transcription	H9 Cell Line	embryonic stem cell
45	chr8:20066600-20079600	Strong transcription	Brain Cingulate Gyrus	brain
46	chr8:20066600-20079600	Strong transcription	Brain Inferior Temporal Lobe	brain
47	chr8:20066600-20079800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr8:20066600-20079800	Strong transcription	Brain Hippocampus Middle	brain
49	chr8:20066600-20080000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr8:20066600-20080000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links