Variant report

Variant	rs8013890
Chromosome Location	chr14:78781507-78781508
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10873315	0.82[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11159349	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1882813	0.90[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs1882814	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs61186016	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61271440	0.85[EUR][1000 genomes]
rs61976036	0.81[ASN][1000 genomes]
rs7150775	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7153365	0.81[ASN][1000 genomes]
rs7153993	0.83[CHB][hapmap];0.83[ASN][1000 genomes]
rs7154078	0.89[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs7155434	0.95[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8009370	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832837	chr14:78766805-78946526	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv1054051	chr14:78772614-78805311	Enhancers Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78769200-78783200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr14:78774600-78782600	Weak transcription	Fetal Brain Male	brain
3	chr14:78778800-78781600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:78778800-78781600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr14:78779200-78787000	Enhancers	Brain Germinal Matrix	brain
6	chr14:78779400-78786000	Weak transcription	Brain Anterior Caudate	brain
7	chr14:78779600-78781600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr14:78779600-78782200	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr14:78779600-78782800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr14:78779600-78783000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr14:78779800-78782000	Weak transcription	Brain Angular Gyrus	brain
12	chr14:78779800-78782400	Weak transcription	Brain Hippocampus Middle	brain
13	chr14:78780400-78783000	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr14:78780400-78783200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr14:78780400-78783400	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr14:78780600-78783200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr14:78780600-78783800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr14:78780800-78781600	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr14:78780800-78783600	Enhancers	HUES64 Cell Line	embryonic stem cell
20	chr14:78780800-78783800	Enhancers	K562	blood
21	chr14:78781000-78783000	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:78781000-78783600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
23	chr14:78781200-78782200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr14:78781200-78782200	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr14:78781200-78783000	Weak transcription	Brain Substantia Nigra	brain

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