Variant report

Variant	rs8014501
Chromosome Location	chr14:25065095-25065096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1033810	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12590828	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1951593	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1951595	0.86[EUR][1000 genomes]
rs1957525	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2332406	0.86[EUR][1000 genomes]
rs4982970	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7143637	0.86[EUR][1000 genomes]
rs7144488	0.91[EUR][1000 genomes]
rs7160134	0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8004747	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv510631	chr14:25045183-25172311	Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25064200-25065600	Enhancers	NHEK	skin
2	chr14:25064400-25065200	Flanking Active TSS	Hela-S3	cervix
3	chr14:25064600-25065200	Enhancers	HepG2	liver
4	chr14:25064800-25065200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr14:25064800-25065200	Enhancers	A549	lung
6	chr14:25064800-25065600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:25065000-25065400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
8	chr14:25065000-25065600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr14:25065000-25065600	Flanking Active TSS	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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