Variant report

Variant	rs8015354
Chromosome Location	chr14:64340321-64340322
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:64332982..64334814-chr14:64338976..64341175,2	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MTHFD1-4	chr14:64340135-64340724	NONHSAT037319

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11158512	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11158516	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12587472	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12588087	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12894053	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12894864	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1959034	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1959035	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2210650	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2275018	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2357002	0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2357003	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs34780876	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4902247	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4902248	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573534	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6573536	0.81[AFR][1000 genomes]
rs7145657	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7146821	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7149766	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7153101	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7157314	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7157323	0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7158974	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7160127	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7493416	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8005899	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs8015158	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8022917	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs945030	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs954730	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9707224	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs998241	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1038825	chr14:64109441-64491720	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv1037140	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv542119	chr14:64248421-64442980	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64321200-64340600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:64321400-64350200	Weak transcription	Fetal Stomach	stomach
3	chr14:64322800-64340400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr14:64322800-64340600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:64323200-64340400	Weak transcription	Spleen	Spleen
6	chr14:64324600-64341400	Weak transcription	HSMM	muscle
7	chr14:64327200-64340600	Weak transcription	Right Ventricle	heart
8	chr14:64327400-64355200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
9	chr14:64327600-64360000	Weak transcription	Gastric	stomach
10	chr14:64327800-64342200	Weak transcription	Esophagus	oesophagus
11	chr14:64330200-64343600	Weak transcription	Brain Germinal Matrix	brain
12	chr14:64331200-64356400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr14:64331400-64340400	Weak transcription	Fetal Heart	heart
14	chr14:64331400-64340800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr14:64331400-64342200	Weak transcription	NHLF	lung
16	chr14:64331600-64340400	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr14:64331600-64340400	Weak transcription	Right Atrium	heart
18	chr14:64331600-64340800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr14:64331600-64341000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
20	chr14:64331600-64341800	Weak transcription	NHDF-Ad	bronchial
21	chr14:64331800-64341400	Enhancers	Primary T cells fromperipheralblood	blood
22	chr14:64333000-64341000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:64333200-64340400	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr14:64333200-64340400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr14:64333400-64340400	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr14:64333400-64340600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr14:64335200-64340400	Weak transcription	Lung	lung
28	chr14:64335200-64340400	Weak transcription	Ovary	ovary
29	chr14:64335200-64341800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr14:64335200-64342200	Weak transcription	Placenta	Placenta
31	chr14:64335200-64342200	Weak transcription	Pancreas	Pancrea
32	chr14:64335200-64360000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:64335400-64340800	Weak transcription	Rectal Smooth Muscle	rectum
34	chr14:64335600-64340400	Weak transcription	Fetal Kidney	kidney
35	chr14:64335600-64340600	Weak transcription	Fetal Lung	lung
36	chr14:64335800-64342000	Weak transcription	Colon Smooth Muscle	Colon
37	chr14:64336000-64340600	Weak transcription	Rectal Mucosa Donor 31	rectum
38	chr14:64336800-64341400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr14:64336800-64362800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr14:64337000-64340400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr14:64337000-64340400	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr14:64337000-64340400	Weak transcription	Skeletal Muscle Female	skeletal muscle
43	chr14:64337000-64340600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr14:64337000-64340600	Weak transcription	Aorta	Aorta
45	chr14:64337000-64340600	Weak transcription	Fetal Intestine Small	intestine
46	chr14:64337000-64340600	Weak transcription	Stomach Mucosa	stomach
47	chr14:64337000-64340800	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr14:64337000-64340800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr14:64337000-64340800	Weak transcription	Hela-S3	cervix
50	chr14:64337000-64341000	Weak transcription	Small Intestine	intestine

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