Variant report

Variant	rs8015596
Chromosome Location	chr14:78322802-78322803
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:78317373..78319812-chr14:78319839..78322835,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10131632	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10134142	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10135517	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11159295	0.96[ASN][1000 genomes]
rs11848126	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17106478	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs2112130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28613643	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs7158755	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7160485	0.92[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs8005023	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8005040	0.86[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8008978	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8011687	0.84[ASN][1000 genomes]
rs8015122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043788	chr14:78178490-78381190	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:78293400-78331800	Weak transcription	Pancreas	Pancrea
2	chr14:78297600-78324000	Weak transcription	Ovary	ovary
3	chr14:78297600-78336600	Weak transcription	Left Ventricle	heart
4	chr14:78297800-78353600	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr14:78299000-78325200	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr14:78300000-78325400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr14:78301200-78325200	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:78301400-78325200	Weak transcription	Gastric	stomach
9	chr14:78301400-78325400	Weak transcription	Lung	lung
10	chr14:78301400-78342200	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:78302200-78323200	Weak transcription	Right Ventricle	heart
12	chr14:78302200-78331000	Weak transcription	Liver	Liver
13	chr14:78306000-78326400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
14	chr14:78306000-78328800	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr14:78306000-78331800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr14:78306000-78356400	Weak transcription	Thymus	Thymus
17	chr14:78306600-78330400	Weak transcription	Dnd41	blood
18	chr14:78310000-78325200	Weak transcription	Brain Substantia Nigra	brain
19	chr14:78310000-78339400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:78310400-78345000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr14:78311600-78325000	Weak transcription	Primary T cells from cord blood	blood
22	chr14:78313400-78326000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr14:78314200-78348400	Weak transcription	Colon Smooth Muscle	Colon
24	chr14:78315800-78326400	Weak transcription	Fetal Heart	heart
25	chr14:78318200-78326000	Weak transcription	Brain Hippocampus Middle	brain
26	chr14:78320000-78325200	Weak transcription	Fetal Intestine Small	intestine
27	chr14:78320800-78342200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr14:78321400-78342800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
29	chr14:78321600-78325600	Weak transcription	Adipose Nuclei	Adipose
30	chr14:78321800-78335400	Weak transcription	Psoas Muscle	Psoas
31	chr14:78321800-78348400	Weak transcription	Placenta	Placenta
32	chr14:78322000-78342000	Weak transcription	Skeletal Muscle Male	skeletal muscle
33	chr14:78322000-78342600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr14:78322200-78353400	Weak transcription	Duodenum Mucosa	Duodenum
35	chr14:78322400-78327200	Weak transcription	Colonic Mucosa	Colon
36	chr14:78322800-78331600	Enhancers	K562	blood

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