Variant report

Variant	rs80157246
Chromosome Location	chr4:54542200-54542201
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829936	chr4:54367783-54556123	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3449865	chr4:54541828-54543952	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv15022	chr4:54541987-54543303	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54537200-54542400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr4:54538200-54542200	Weak transcription	Ovary	ovary
3	chr4:54539000-54542400	Weak transcription	Liver	Liver
4	chr4:54541200-54542400	Enhancers	Monocytes-CD14+_RO01746	blood
5	chr4:54541200-54543000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr4:54542000-54542400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr4:54542200-54542400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr4:54542200-54543200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr4:54542200-54543400	Enhancers	Adipose Nuclei	Adipose
10	chr4:54542200-54543400	Enhancers	Ovary	ovary
11	chr4:54542200-54543400	Enhancers	NHLF	lung
12	chr4:54542200-54543600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr4:54542200-54543600	Enhancers	Muscle Satellite Cultured Cells	--
14	chr4:54542200-54543800	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr4:54542200-54543800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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